-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1372

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 22, 30
Couldn't classify 2171, 2189
Sorry, prediction GeneMark_model.109265_t fails validation.
(AGG)	 AG	22-30	GT	GGG
(GAT)	 AG	56-67	GT	GAG
(TAA)	 AG	873-902	GT	GGG
(AGG)	 AG	923-952	GT	GGG
(AGG)	 AG	986-1018	GT	GGG
(CGA)	 AG	1071-1097	GT	GGG
(AAG)	 AG	1120-1134	GT	GGG
(AGG)	 AG	1155-1219	GT	TAG
(GCC)	 AG	1422-1431	GT	AGG
(ACT)	 AG	1620-1626	GT	GTG
(CAC)	 AG	1805-1833	GT	CTG
(AAG)	 AG	1950-1988	GT	CTG
(GAG)	 AG	2031-2078	GT	GGG
(GGG)	 AG	2114-2149	GT	GGG
(AGG)	 AG	2171-2189	GT	AGG
-recovered GeneMark_model.109265_t, terminal, 1422, 1431
-recovered GeneMark_model.109265_t, internal, 22, 30
-recovered GeneMark_model.109265_t, internal, 56, 67
-recovered GeneMark_model.109265_t, internal, 873, 902
-recovered GeneMark_model.109265_t, internal, 923, 952
-recovered GeneMark_model.109265_t, internal, 986, 1018
-recovered GeneMark_model.109265_t, internal, 1071, 1097
-recovered GeneMark_model.109265_t, internal, 1120, 1134
-recovered GeneMark_model.109265_t, internal, 1155, 1219
-recovered GeneMark_model.109265_t, internal, 1422, 1431
-recovered GeneMark_model.109265_t, internal, 1620, 1626
-recovered GeneMark_model.109265_t, internal, 1805, 1833
-recovered GeneMark_model.109265_t, internal, 1950, 1988
-recovered GeneMark_model.109265_t, internal, 2031, 2078
-recovered GeneMark_model.109265_t, internal, 2114, 2149
-recovered GeneMark_model.109265_t, internal, 2171, 2189
Couldn't classify 2001, 2189
Sorry, prediction snap_scaffold_1372-snap.1-T1 fails validation.
(ATG)	 AG	1163-1179	GT	GGG
(GAG)	 AG	2001-2189	GT	AGG
-recovered snap_scaffold_1372-snap.1-T1, initial, 1163, 1179
-recovered snap_scaffold_1372-snap.1-T1, internal, 1163, 1179
-recovered snap_scaffold_1372-snap.1-T1, internal, 2001, 2189

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 564, 684
Sorry, prediction Augustus_model.g41647.t1 fails validation.
(GGC)	 AG	564-684	GT	AGG
(GGC)	 AG	779-883	AG	GAA
-recovered Augustus_model.g41647.t1, terminal, 779, 883
-recovered Augustus_model.g41647.t1, internal, 564, 684

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2549
-exon list size: 46


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support