-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1371

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1058, 1150
Sorry, prediction GeneMark_model.109263_t fails validation.
(GAT)	 AG	1058-1150	GT	AGG
(ATC)	 AG	1187-1349	GC	AAG
-recovered GeneMark_model.109263_t, terminal, 1187, 1349
-recovered GeneMark_model.109263_t, internal, 1058, 1150
-recovered GeneMark_model.109263_t, internal, 1187, 1349

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 365, 593
Sorry, prediction GeneMark_model.109264_t fails validation.
(TCC)	 AG	365-593	GT	CAG
(GGG)	 AG	614-626	CC	AAC
-recovered GeneMark_model.109264_t, terminal, 614, 626
-recovered GeneMark_model.109264_t, internal, 365, 593
Valid prediction for snap_scaffold_1371-snap.1-T1
add_exon() Sorry, snap_scaffold_1371-snap.1-T1 365-597-terminal-1 is invalid.
Valid prediction for Augustus_model.g41646.t1
add_exon() Sorry, Augustus_model.g41646.t1 365-597-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62615-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62615-T1 365-597-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2551
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support