-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1369

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1903, 1981
Sorry, prediction GlimmerHMM_glimmerT_62613-T1 fails validation.
(ATG)	 AG	807-899	GT	CAG
(ATC)	 AG	1035-1157	GT	AGG
(GTG)	 AG	1903-1981	GT	CGG
-recovered GlimmerHMM_glimmerT_62613-T1, initial, 807, 899
-recovered GlimmerHMM_glimmerT_62613-T1, internal, 807, 899
-recovered GlimmerHMM_glimmerT_62613-T1, internal, 1035, 1157
-recovered GlimmerHMM_glimmerT_62613-T1, internal, 1903, 1981
Couldn't classify 366, 440
Couldn't classify 2125, 2186
Sorry, prediction Augustus_model.g41645.t1 fails validation.
(CTC)	 AG	366-440	GT	TGG
(GCC)	 AG	820-909	GT	AGG
(ATC)	 AG	1035-1157	GT	AGG
(GTG)	 AG	1903-1981	GT	CGG
(ATT)	 AG	2125-2186	GT	CAG
-recovered Augustus_model.g41645.t1, internal, 366, 440
-recovered Augustus_model.g41645.t1, internal, 820, 909
-recovered Augustus_model.g41645.t1, internal, 1035, 1157
-recovered Augustus_model.g41645.t1, internal, 1903, 1981
-recovered Augustus_model.g41645.t1, internal, 2125, 2186
Couldn't classify 366, 440
Couldn't classify 2125, 2186
Sorry, prediction snap_scaffold_1369-snap.1-T1 fails validation.
(CTC)	 AG	366-440	GT	TGG
(GCC)	 AG	820-909	GT	AGG
(ATC)	 AG	1035-1157	GT	AGG
(GTG)	 AG	1903-1981	GT	CGG
(ATT)	 AG	2125-2186	GT	CAG
-recovered snap_scaffold_1369-snap.1-T1, internal, 366, 440
-recovered snap_scaffold_1369-snap.1-T1, internal, 820, 909
-recovered snap_scaffold_1369-snap.1-T1, internal, 1035, 1157
-recovered snap_scaffold_1369-snap.1-T1, internal, 1903, 1981
-recovered snap_scaffold_1369-snap.1-T1, internal, 2125, 2186
Couldn't classify 366, 484
Sorry, prediction GeneMark_model.109261_t fails validation.
(CTC)	 AG	366-484	GT	ATG
(ATG)	 AG	807-909	GT	AGG
(ATC)	 AG	1035-1157	GT	AGG
(GAA)	 AG	1624-1635	TC	GAT
-recovered GeneMark_model.109261_t, initial, 807, 909
-recovered GeneMark_model.109261_t, terminal, 1624, 1635
-recovered GeneMark_model.109261_t, internal, 366, 484
-recovered GeneMark_model.109261_t, internal, 807, 909
-recovered GeneMark_model.109261_t, internal, 1035, 1157

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 32, 62
Sorry, prediction GeneMark_model.109262_t fails validation.
(GGG)	 AG	32-62	GT	AGG
(GGC)	 AG	562-575	GT	CCG
(ACA)	 AG	746-821	CA	AAC
-recovered GeneMark_model.109262_t, terminal, 746, 821
-recovered GeneMark_model.109262_t, internal, 32, 62
-recovered GeneMark_model.109262_t, internal, 562, 575

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2555
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support