-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1366

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1366-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 401, 424
Couldn't classify 2505, 2554
Sorry, prediction GeneMark_model.109257_t fails validation.
(AGG)	 AG	401-424	GT	AGG
(GTG)	 AG	461-481	GT	CAG
(TGA)	 AG	505-510	GT	AGG
(AGT)	 AG	540-623	GT	GGG
(AGG)	 AG	972-995	GT	AGG
(GTG)	 AG	1018-1026	GT	AGG
(GAG)	 AG	1058-1063	GT	TGG
(GGT)	 AG	1084-1092	GT	GGG
(GAG)	 AG	1147-1164	GT	GGG
(GGT)	 AG	1187-1331	GT	AGG
(GTA)	 AG	1874-1893	GT	ATG
(AGA)	 AG	1988-2123	GT	ACG
(AAG)	 AG	2303-2433	GT	AGG
(GGT)	 AG	2505-2554	GC	AGG
-recovered GeneMark_model.109257_t, internal, 401, 424
-recovered GeneMark_model.109257_t, internal, 461, 481
-recovered GeneMark_model.109257_t, internal, 505, 510
-recovered GeneMark_model.109257_t, internal, 540, 623
-recovered GeneMark_model.109257_t, internal, 972, 995
-recovered GeneMark_model.109257_t, internal, 1018, 1026
-recovered GeneMark_model.109257_t, internal, 1058, 1063
-recovered GeneMark_model.109257_t, internal, 1084, 1092
-recovered GeneMark_model.109257_t, internal, 1147, 1164
-recovered GeneMark_model.109257_t, internal, 1187, 1331
-recovered GeneMark_model.109257_t, internal, 1874, 1893
-recovered GeneMark_model.109257_t, internal, 1988, 2123
-recovered GeneMark_model.109257_t, internal, 2303, 2433
-recovered GeneMark_model.109257_t, internal, 2505, 2554
Valid prediction for Augustus_model.g41643.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2575
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support