-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1364

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 252, 365
Sorry, prediction GeneMark_model.109255_t fails validation.
(AGA)	 AG	252-365	GT	GGG
(TGA)	 AG	392-535	GT	TAG
(TGA)	 AG	557-577	GT	GAG
(GAT)	 AG	616-654	GT	GAG
(AGA)	 AG	678-716	GT	GAG
(GAT)	 AG	765-806	GT	GAG
(AGT)	 AG	830-856	GT	GTG
(TCA)	 AG	884-899	TT	AAT
-recovered GeneMark_model.109255_t, terminal, 884, 899
-recovered GeneMark_model.109255_t, internal, 252, 365
-recovered GeneMark_model.109255_t, internal, 392, 535
-recovered GeneMark_model.109255_t, internal, 557, 577
-recovered GeneMark_model.109255_t, internal, 616, 654
-recovered GeneMark_model.109255_t, internal, 678, 716
-recovered GeneMark_model.109255_t, internal, 765, 806
-recovered GeneMark_model.109255_t, internal, 830, 856

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2581
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support