-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1362

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 428, 549
Sorry, prediction snap_scaffold_1362-snap.2-T1 fails validation.
(CCT)	 AG	428-549	GT	CGG
(TGG)	 AG	1588-1971	GT	GGG
(GGT)	 AG	2277-2464	AC	AGA
-recovered snap_scaffold_1362-snap.2-T1, terminal, 2277, 2464
-recovered snap_scaffold_1362-snap.2-T1, internal, 428, 549
-recovered snap_scaffold_1362-snap.2-T1, internal, 1588, 1971
Couldn't classify 44, 61
Sorry, prediction GeneMark_model.109253_t fails validation.
(GGG)	 AG	44-61	GT	GAG
(CCT)	 AG	428-554	GT	CTG
(AGA)	 AG	829-839	GT	GGG
(ACC)	 AG	889-903	GT	GTG
(AGA)	 AG	926-943	GT	GAG
(ACG)	 AG	972-1007	GT	GGG
(AGA)	 AG	1057-1089	GT	GGG
(AGA)	 AG	1181-1201	GT	GTG
(AGA)	 AG	1227-1247	GT	GGG
(CAG)	 AG	1278-1283	GT	GGG
(AGA)	 AG	1345-1359	GT	CAG
(CTT)	 AG	1398-1409	GT	GAG
(GGA)	 AG	1443-1553	GT	GGG
(AGT)	 AG	1574-1702	GT	CTG
(ACA)	 AG	1779-1928	GT	GGG
(AGG)	 AG	1950-1961	GT	GGG
(AGA)	 AG	1991-2029	GT	GGG
(AAA)	 AG	2061-2067	CA	GAC
-recovered GeneMark_model.109253_t, terminal, 2061, 2067
-recovered GeneMark_model.109253_t, internal, 44, 61
-recovered GeneMark_model.109253_t, internal, 428, 554
-recovered GeneMark_model.109253_t, internal, 829, 839
-recovered GeneMark_model.109253_t, internal, 889, 903
-recovered GeneMark_model.109253_t, internal, 926, 943
-recovered GeneMark_model.109253_t, internal, 972, 1007
-recovered GeneMark_model.109253_t, internal, 1057, 1089
-recovered GeneMark_model.109253_t, internal, 1181, 1201
-recovered GeneMark_model.109253_t, internal, 1227, 1247
-recovered GeneMark_model.109253_t, internal, 1278, 1283
-recovered GeneMark_model.109253_t, internal, 1345, 1359
-recovered GeneMark_model.109253_t, internal, 1398, 1409
-recovered GeneMark_model.109253_t, internal, 1443, 1553
-recovered GeneMark_model.109253_t, internal, 1574, 1702
-recovered GeneMark_model.109253_t, internal, 1779, 1928
-recovered GeneMark_model.109253_t, internal, 1950, 1961
-recovered GeneMark_model.109253_t, internal, 1991, 2029

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 163, 321
Sorry, prediction GeneMark_model.109254_t fails validation.
(GTG)	 AG	163-321	GT	AGG
(GGG)	 AG	353-385	TG	AGT
-recovered GeneMark_model.109254_t, terminal, 353, 385
-recovered GeneMark_model.109254_t, internal, 163, 321
Couldn't classify 163, 321
Sorry, prediction GlimmerHMM_glimmerT_62608-T1 fails validation.
(GTG)	 AG	163-321	GT	AGG
(GTA)	 AG	674-853	GT	AGG
(GTG)	 AG	933-1013	GT	TGG
(GCA)	 AG	2019-2066	CG	AAC
-recovered GlimmerHMM_glimmerT_62608-T1, terminal, 2019, 2066
-recovered GlimmerHMM_glimmerT_62608-T1, internal, 163, 321
-recovered GlimmerHMM_glimmerT_62608-T1, internal, 674, 853
-recovered GlimmerHMM_glimmerT_62608-T1, internal, 933, 1013
Couldn't classify 163, 321
Sorry, prediction snap_scaffold_1362-snap.1-T1 fails validation.
(GTG)	 AG	163-321	GT	AGG
(GTA)	 AG	674-853	GT	AGG
(GTG)	 AG	933-1020	GT	AGG
(GCA)	 AG	2019-2251	AG	GAA
-recovered snap_scaffold_1362-snap.1-T1, terminal, 2019, 2251
-recovered snap_scaffold_1362-snap.1-T1, internal, 163, 321
-recovered snap_scaffold_1362-snap.1-T1, internal, 674, 853
-recovered snap_scaffold_1362-snap.1-T1, internal, 933, 1020
Couldn't classify 163, 321
Sorry, prediction Augustus_model.g41638.t1 fails validation.
(GTG)	 AG	163-321	GT	AGG
(GTA)	 AG	674-853	GT	AGG
(GTG)	 AG	933-1020	GT	AGG
(GCA)	 AG	2019-2251	AG	GAA
-recovered Augustus_model.g41638.t1, terminal, 2019, 2251
-recovered Augustus_model.g41638.t1, internal, 163, 321
-recovered Augustus_model.g41638.t1, internal, 674, 853
-recovered Augustus_model.g41638.t1, internal, 933, 1020

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2421, rend_intergenic: 428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2583
-exon list size: 58


building trellis

1.7    
3.3    
5.0    
6.7    
8.3    
10.0    
11.7    
13.3    
15.0    
16.7    
18.3    
20.0    
21.7    
23.3    
25.0    
26.7    
28.3    
30.0    
31.7    
33.3    
35.0    
36.7    
38.3    
40.0    
41.7    
43.3    
45.0    
46.7    
48.3    
50.0    
51.7    
53.3    
55.0    
56.7    
58.3    
60.0    
61.7    
63.3    
65.0    
66.7    
68.3    
70.0    
71.7    
73.3    
75.0    
76.7    
78.3    
80.0    
81.7    
83.3    
85.0    
86.7    
88.3    
90.0    
91.7    
93.3    
95.0    
96.7    
98.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2421, rend_intergenic: 428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support