-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1361

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1916, 2077
Sorry, prediction GeneMark_model.109252_t fails validation.
(ATG)	 AG	1832-1842	GT	AGG
(AAA)	 AG	1878-1886	GT	GAG
(GGG)	 AG	1916-2077	GT	AGG
-recovered GeneMark_model.109252_t, initial, 1832, 1842
-recovered GeneMark_model.109252_t, internal, 1832, 1842
-recovered GeneMark_model.109252_t, internal, 1878, 1886
-recovered GeneMark_model.109252_t, internal, 1916, 2077
Valid prediction for GeneMark_model.109251_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109250_t
Valid prediction for Augustus_model.g41637.t1
Couldn't classify 217, 330
Sorry, prediction GlimmerHMM_glimmerT_62607-T1 fails validation.
(TTG)	 AG	217-330	GT	AGG
(CAC)	 AG	2245-2469	GG	GAG
-recovered GlimmerHMM_glimmerT_62607-T1, terminal, 2245, 2469
-recovered GlimmerHMM_glimmerT_62607-T1, internal, 217, 330
Couldn't classify 217, 330
Sorry, prediction snap_scaffold_1361-snap.1-T1 fails validation.
(TTG)	 AG	217-330	GT	AGG
(CAC)	 AG	2245-2469	GG	GAG
-recovered snap_scaffold_1361-snap.1-T1, terminal, 2245, 2469
-recovered snap_scaffold_1361-snap.1-T1, internal, 217, 330

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2586
-exon list size: 18


building trellis

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35.0    
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45.0    
50.0    
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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support