-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_136

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106697_t
Valid prediction for GeneMark_model.106698_t
Couldn't classify 4365, 4855
Couldn't classify 12029, 12088
Sorry, prediction snap_scaffold_136-snap.2-T1 fails validation.
(GAA)	 AG	4365-4855	GT	AGG
(TAT)	 AG	6987-7032	GT	AGG
(CCA)	 AG	10099-10215	GT	CGG
(CCC)	 AG	12029-12088	GT	ACG
-recovered snap_scaffold_136-snap.2-T1, internal, 4365, 4855
-recovered snap_scaffold_136-snap.2-T1, internal, 6987, 7032
-recovered snap_scaffold_136-snap.2-T1, internal, 10099, 10215
-recovered snap_scaffold_136-snap.2-T1, internal, 12029, 12088

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2349, 2512
Sorry, prediction GlimmerHMM_glimmerT_61362-T1 fails validation.
(GTC)	 AG	2349-2512	GT	AGG
(GAG)	 AG	2952-3138	GT	AAG
(GGA)	 AG	5229-5373	GT	TGG
(AAC)	 AG	6056-6219	GT	AGG
(GTT)	 AG	9654-9849	AA	GAA
add_exon() Sorry, GlimmerHMM_glimmerT_61362-T1 2349-2512-terminal-2 is invalid.
-recovered GlimmerHMM_glimmerT_61362-T1, terminal, 2349, 2512
-recovered GlimmerHMM_glimmerT_61362-T1, terminal, 9654, 9849
-recovered GlimmerHMM_glimmerT_61362-T1, internal, 2349, 2512
-recovered GlimmerHMM_glimmerT_61362-T1, internal, 2952, 3138
-recovered GlimmerHMM_glimmerT_61362-T1, internal, 5229, 5373
-recovered GlimmerHMM_glimmerT_61362-T1, internal, 6056, 6219
Couldn't classify 9056, 9174
Sorry, prediction pasa_asmbl_11703.p1 fails validation.
(TTC)	 CT	9056-9174	GT	AGG
(GTT)	 AG	9654-9849	AA	GAA
-recovered pasa_asmbl_11703.p1, terminal, 9654, 9849
Valid prediction for GeneMark_model.106696_t
Valid prediction for Augustus_model.g40815.t1
Couldn't classify 2374, 2512
Couldn't classify 6056, 6220
Sorry, prediction pasa_asmbl_11701.p1 fails validation.
(CTG)	 GC	2374-2512	GT	AGG
(GAG)	 AG	2952-3138	GT	AAG
(GGA)	 AG	5229-5373	GT	TGG
(AAC)	 AG	6056-6220	TA	GGT
-recovered pasa_asmbl_11701.p1, internal, 2952, 3138
-recovered pasa_asmbl_11701.p1, internal, 5229, 5373
Couldn't classify 355, 475
Sorry, prediction snap_scaffold_136-snap.1-T1 fails validation.
(TCG)	 AG	355-475	GT	GAG
(CGA)	 AG	2359-2512	GT	AGG
(GAG)	 AG	2952-3138	GT	AAG
(GGA)	 AG	5229-5373	GT	TGG
(AAC)	 AG	6056-6219	GT	AGG
(ACT)	 AG	8683-8906	GT	CTG
(GTC)	 AG	9066-9174	GT	AGG
(GTT)	 AG	9654-9849	AA	GAA
add_exon() Sorry, snap_scaffold_136-snap.1-T1 2359-2512-terminal-3 is invalid.
-recovered snap_scaffold_136-snap.1-T1, terminal, 2359, 2512
-recovered snap_scaffold_136-snap.1-T1, terminal, 9654, 9849
-recovered snap_scaffold_136-snap.1-T1, internal, 355, 475
-recovered snap_scaffold_136-snap.1-T1, internal, 2359, 2512
-recovered snap_scaffold_136-snap.1-T1, internal, 2952, 3138
-recovered snap_scaffold_136-snap.1-T1, internal, 5229, 5373
-recovered snap_scaffold_136-snap.1-T1, internal, 6056, 6219
-recovered snap_scaffold_136-snap.1-T1, internal, 8683, 8906
-recovered snap_scaffold_136-snap.1-T1, internal, 9066, 9174

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12846, rend_intergenic: 4365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 13200
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 12846, rend_intergenic: 4365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support