-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1356

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 45, 188
Sorry, prediction GeneMark_model.109246_t fails validation.
(AGC)	 AG	45-188	GT	GAG
(ATT)	 AG	227-283	GT	GGG
(GAA)	 AG	337-368	GT	CTG
(CAA)	 AG	942-948	GT	GTG
(GGT)	 AG	970-984	GT	GGG
(GGT)	 AG	1014-1028	GT	GGG
(GCA)	 AG	1083-1092	AG	AGA
-recovered GeneMark_model.109246_t, terminal, 1083, 1092
-recovered GeneMark_model.109246_t, internal, 45, 188
-recovered GeneMark_model.109246_t, internal, 227, 283
-recovered GeneMark_model.109246_t, internal, 337, 368
-recovered GeneMark_model.109246_t, internal, 942, 948
-recovered GeneMark_model.109246_t, internal, 970, 984
-recovered GeneMark_model.109246_t, internal, 1014, 1028

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 219, 263
Sorry, prediction GeneMark_model.109247_t fails validation.
(AGA)	 AG	219-263	GT	AGG
(AGA)	 AG	297-308	GT	AAG
(ATT)	 AG	343-363	GT	AGG
(GGA)	 AG	383-391	GT	AGG
(AGA)	 AG	419-433	GT	AGG
(GAC)	 AG	463-471	GT	AGG
(AGA)	 AG	557-628	GT	GAG
(AGA)	 AG	654-674	GT	AAG
(AGA)	 AG	1216-1257	GT	AGG
(AGA)	 AG	1279-1287	GT	GGG
(GGA)	 AG	1319-1327	GT	GGG
(AAA)	 AG	1351-1360	AC	AAA
-recovered GeneMark_model.109247_t, terminal, 1351, 1360
-recovered GeneMark_model.109247_t, internal, 219, 263
-recovered GeneMark_model.109247_t, internal, 297, 308
-recovered GeneMark_model.109247_t, internal, 343, 363
-recovered GeneMark_model.109247_t, internal, 383, 391
-recovered GeneMark_model.109247_t, internal, 419, 433
-recovered GeneMark_model.109247_t, internal, 463, 471
-recovered GeneMark_model.109247_t, internal, 557, 628
-recovered GeneMark_model.109247_t, internal, 654, 674
-recovered GeneMark_model.109247_t, internal, 1216, 1257
-recovered GeneMark_model.109247_t, internal, 1279, 1287
-recovered GeneMark_model.109247_t, internal, 1319, 1327

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2593
-exon list size: 48


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support