-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1355

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2410, 2594
Sorry, prediction Augustus_model.g41635.t1 fails validation.
(ATG)	 AA	814-914	GT	TGG
(CCA)	 AG	1456-1585	GT	GGG
(GGC)	 AG	1765-1902	GT	ATG
(AGG)	 AG	2410-2594		TC
-recovered Augustus_model.g41635.t1, initial, 814, 914
-recovered Augustus_model.g41635.t1, internal, 1456, 1585
-recovered Augustus_model.g41635.t1, internal, 1765, 1902
Couldn't classify 248, 334
Couldn't classify 2410, 2585
Sorry, prediction GeneMark_model.109245_t fails validation.
(GAG)	 AG	248-334	GT	AGG
(CCA)	 AG	1456-1585	GT	GGG
(GGC)	 AG	1765-1902	GT	ATG
(AGG)	 AG	2410-2585	GT	GGG
-recovered GeneMark_model.109245_t, internal, 248, 334
-recovered GeneMark_model.109245_t, internal, 1456, 1585
-recovered GeneMark_model.109245_t, internal, 1765, 1902
-recovered GeneMark_model.109245_t, internal, 2410, 2585
Couldn't classify 229, 334
Couldn't classify 2410, 2562
Sorry, prediction snap_scaffold_1355-snap.1-T1 fails validation.
(TTT)	 AG	229-334	GT	AGG
(GGG)	 AG	1352-1585	GT	GGG
(GGC)	 AG	1765-1902	GT	ATG
(AGG)	 AG	2410-2562	GT	GAG
-recovered snap_scaffold_1355-snap.1-T1, internal, 229, 334
-recovered snap_scaffold_1355-snap.1-T1, internal, 1352, 1585
-recovered snap_scaffold_1355-snap.1-T1, internal, 1765, 1902
-recovered snap_scaffold_1355-snap.1-T1, internal, 2410, 2562

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2594
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support