-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1352

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1425, 1574
Couldn't classify 2399, 2510
Sorry, prediction Augustus_model.g41633.t1 fails validation.
(CCT)	 AG	1425-1574	GT	TGG
(GTG)	 AG	1826-1913	GT	AGG
(TAT)	 AG	2399-2510	GT	TGG
-recovered Augustus_model.g41633.t1, internal, 1425, 1574
-recovered Augustus_model.g41633.t1, internal, 1826, 1913
-recovered Augustus_model.g41633.t1, internal, 2399, 2510
Couldn't classify 1448, 1574
Couldn't classify 2399, 2510
Sorry, prediction pasa_asmbl_11695.p1 fails validation.
(CAG)	 AG	1448-1574	GT	TGG
(GTG)	 AG	1826-1913	GT	AGG
(TAT)	 AG	2399-2510	GT	TGG
-recovered pasa_asmbl_11695.p1, internal, 1448, 1574
-recovered pasa_asmbl_11695.p1, internal, 1826, 1913
-recovered pasa_asmbl_11695.p1, internal, 2399, 2510
Valid prediction for CodingQuarry_transcript_13339-T1
Valid prediction for GlimmerHMM_glimmerT_62603-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62603-T1 1826-2007-terminal-1 is invalid.
Couldn't classify 1425, 1574
Couldn't classify 2399, 2510
Sorry, prediction snap_scaffold_1352-snap.1-T1 fails validation.
(CCT)	 AG	1425-1574	GT	TGG
(GTG)	 AG	1826-1913	GT	AGG
(TAT)	 AG	2399-2510	GT	TGG
-recovered snap_scaffold_1352-snap.1-T1, internal, 1425, 1574
-recovered snap_scaffold_1352-snap.1-T1, internal, 1826, 1913
-recovered snap_scaffold_1352-snap.1-T1, internal, 2399, 2510

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1528, 1581
Sorry, prediction GeneMark_model.109242_t fails validation.
(ATG)	 TC	1076-1080	GT	CTG
(GCT)	 AG	1176-1214	GT	GGG
(GGA)	 AG	1240-1245	GT	GGG
(ATG)	 AG	1268-1309	GT	AAG
(GGG)	 AG	1341-1400	GT	ATG
(GGG)	 AG	1428-1436	GT	GAG
(GAT)	 AG	1492-1506	GT	GTG
(AGA)	 AG	1528-1581	GT	ATG
-recovered GeneMark_model.109242_t, initial, 1076, 1080
-recovered GeneMark_model.109242_t, initial, 1268, 1309
-recovered GeneMark_model.109242_t, internal, 1176, 1214
-recovered GeneMark_model.109242_t, internal, 1240, 1245
-recovered GeneMark_model.109242_t, internal, 1268, 1309
-recovered GeneMark_model.109242_t, internal, 1341, 1400
-recovered GeneMark_model.109242_t, internal, 1428, 1436
-recovered GeneMark_model.109242_t, internal, 1492, 1506
-recovered GeneMark_model.109242_t, internal, 1528, 1581

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2600
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support