-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1348

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62599-T1
Couldn't classify 12, 40
Sorry, prediction GeneMark_model.109237_t fails validation.
(GAG)	 AG	12-40	GT	AGG
(ACC)	 AG	68-114	GT	AGG
(ACC)	 AG	302-363	AG	AGA
-recovered GeneMark_model.109237_t, terminal, 302, 363
-recovered GeneMark_model.109237_t, internal, 12, 40
-recovered GeneMark_model.109237_t, internal, 68, 114
Couldn't classify 290, 418
Sorry, prediction snap_scaffold_1348-snap.1-T1 fails validation.
(TTC)	 AG	290-418	GT	TGG
(ACC)	 AG	2163-2258	CT	AAC
-recovered snap_scaffold_1348-snap.1-T1, terminal, 2163, 2258
-recovered snap_scaffold_1348-snap.1-T1, internal, 290, 418

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 67, 136
Couldn't classify 2117, 2215
Sorry, prediction snap_scaffold_1348-snap.2-T1 fails validation.
(GCT)	 AG	67-136	GT	AGG
(ATG)	 AG	791-852	GT	CAG
(GCT)	 AG	2117-2215	GT	AGG
add_exon() Sorry, snap_scaffold_1348-snap.2-T1 791-852-initial-1 is invalid.
-recovered snap_scaffold_1348-snap.2-T1, initial, 791, 852
-recovered snap_scaffold_1348-snap.2-T1, internal, 67, 136
-recovered snap_scaffold_1348-snap.2-T1, internal, 791, 852
-recovered snap_scaffold_1348-snap.2-T1, internal, 2117, 2215
Valid prediction for Augustus_model.g41631.t1
Valid prediction for GeneMark_model.109238_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2258, rend_intergenic: 391  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2605
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2258, rend_intergenic: 391  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support