-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1347

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109235_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62598-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62598-T1 625-793-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62597-T1
Couldn't classify 34, 54
Sorry, prediction GeneMark_model.109236_t fails validation.
(GGA)	 AG	34-54	GT	GGG
(GCT)	 AG	1183-1360	CC	AAC
-recovered GeneMark_model.109236_t, terminal, 1183, 1360
-recovered GeneMark_model.109236_t, internal, 34, 54
Couldn't classify 2030, 2167
Sorry, prediction snap_scaffold_1347-snap.1-T1 fails validation.
(ATG)	 AA	886-963	GT	GGG
(GCT)	 AG	1183-1347	GT	GCG
(CTC)	 AG	1777-1930	GT	AGG
(GCC)	 AG	2030-2167	GT	ATG
-recovered snap_scaffold_1347-snap.1-T1, initial, 886, 963
-recovered snap_scaffold_1347-snap.1-T1, internal, 1183, 1347
-recovered snap_scaffold_1347-snap.1-T1, internal, 1777, 1930
-recovered snap_scaffold_1347-snap.1-T1, internal, 2030, 2167
Valid prediction for Augustus_model.g41630.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2605
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support