-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1345

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 38, 96
Sorry, prediction GeneMark_model.109232_t fails validation.
(TGC)	 AG	38-96	GT	AAG
(CAC)	 AG	530-572	GT	GGG
(AGG)	 AG	626-649	GT	AGG
(ATG)	 AG	682-699	GT	AGG
(GGG)	 AG	936-1031	GT	CAG
(GGG)	 AG	1067-1222	GC	GGG
(GGA)	 AG	1328-1577	AG	AGA
-recovered GeneMark_model.109232_t, initial, 682, 699
-recovered GeneMark_model.109232_t, terminal, 1328, 1577
-recovered GeneMark_model.109232_t, internal, 38, 96
-recovered GeneMark_model.109232_t, internal, 530, 572
-recovered GeneMark_model.109232_t, internal, 626, 649
-recovered GeneMark_model.109232_t, internal, 682, 699
-recovered GeneMark_model.109232_t, internal, 936, 1031
-recovered GeneMark_model.109232_t, internal, 1067, 1222
Couldn't classify 123, 205
Couldn't classify 530, 686
Sorry, prediction snap_scaffold_1345-snap.1-T1 fails validation.
(GGA)	 AG	123-205	GT	GAG
(CAC)	 AG	530-686	GT	TGG
-recovered snap_scaffold_1345-snap.1-T1, internal, 123, 205
-recovered snap_scaffold_1345-snap.1-T1, internal, 530, 686
Valid prediction for GlimmerHMM_glimmerT_62596-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 169, 254
Sorry, prediction GeneMark_model.109233_t fails validation.
(GCT)	 AG	169-254	GT	GTG
(GAA)	 AG	668-685	GT	GAG
(ACA)	 AG	710-742	GT	GAG
(ATG)	 AG	766-877	AG	AGA
-recovered GeneMark_model.109233_t, terminal, 766, 877
-recovered GeneMark_model.109233_t, internal, 169, 254
-recovered GeneMark_model.109233_t, internal, 668, 685
-recovered GeneMark_model.109233_t, internal, 710, 742

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2607
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support