-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1344

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 50, 61
Couldn't classify 613, 622
Sorry, prediction GeneMark_model.109231_t fails validation.
(AGA)	 AG	50-61	GT	CAG
(ACT)	 AG	84-125	GT	CAG
(ACT)	 AG	164-238	GT	CAG
(AGA)	 AG	259-270	GT	CGG
(ACT)	 AG	293-334	GT	CAG
(AGA)	 AG	355-366	GT	CGG
(AGA)	 AG	387-398	GT	CAG
(AGA)	 AG	419-430	GT	CAG
(AGA)	 AG	451-462	GT	CGG
(AGA)	 AG	483-494	GT	CAG
(AGA)	 AG	515-526	GT	CAG
(ACT)	 AG	549-590	GT	CAG
(ACT)	 AG	613-622	GT	CGG
-recovered GeneMark_model.109231_t, internal, 50, 61
-recovered GeneMark_model.109231_t, internal, 84, 125
-recovered GeneMark_model.109231_t, internal, 164, 238
-recovered GeneMark_model.109231_t, internal, 259, 270
-recovered GeneMark_model.109231_t, internal, 293, 334
-recovered GeneMark_model.109231_t, internal, 355, 366
-recovered GeneMark_model.109231_t, internal, 387, 398
-recovered GeneMark_model.109231_t, internal, 419, 430
-recovered GeneMark_model.109231_t, internal, 451, 462
-recovered GeneMark_model.109231_t, internal, 483, 494
-recovered GeneMark_model.109231_t, internal, 515, 526
-recovered GeneMark_model.109231_t, internal, 549, 590
-recovered GeneMark_model.109231_t, internal, 613, 622

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2611
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support