-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1342

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2238, 2439
Sorry, prediction snap_scaffold_1342-snap.1-T1 fails validation.
(AAG)	 AG	2238-2439	GT	GGG
-recovered snap_scaffold_1342-snap.1-T1, internal, 2238, 2439
Couldn't classify 2498, 2573
Sorry, prediction GeneMark_model.109229_t fails validation.
(ATG)	 AA	2405-2439	GT	GGG
(GGT)	 AG	2463-2474	GT	GGG
(GGT)	 AG	2498-2573	GT	AGG
-recovered GeneMark_model.109229_t, initial, 2405, 2439
-recovered GeneMark_model.109229_t, internal, 2463, 2474
-recovered GeneMark_model.109229_t, internal, 2498, 2573

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109228_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2613
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support