-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1341

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 41, 118
Sorry, prediction GeneMark_model.109226_t fails validation.
(AGA)	 AG	41-118	GT	ACG
(GCT)	 AG	227-388	GT	GGG
(ACA)	 AG	444-597	AC	AGA
-recovered GeneMark_model.109226_t, terminal, 444, 597
-recovered GeneMark_model.109226_t, internal, 41, 118
-recovered GeneMark_model.109226_t, internal, 227, 388

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 971, 1231
Sorry, prediction GeneMark_model.109227_t fails validation.
(CTT)	 AG	971-1231	GT	AGG
(GTG)	 AG	1839-1930	GT	TGG
(GTA)	 AG	1956-1976	CT	GAC
-recovered GeneMark_model.109227_t, terminal, 1956, 1976
-recovered GeneMark_model.109227_t, internal, 971, 1231
-recovered GeneMark_model.109227_t, internal, 1839, 1930
Valid prediction for GlimmerHMM_glimmerT_62595-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62595-T1 971-1281-terminal-1 is invalid.
Valid prediction for snap_scaffold_1341-snap.1-T1
Valid prediction for Augustus_model.g41629.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2617
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support