-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1338

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1338-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62591-T1
Couldn't classify 24, 103
Sorry, prediction GeneMark_model.109220_t fails validation.
(GGA)	 AG	24-103	GT	AGG
(TCC)	 AG	144-212	GT	CGG
(GCG)	 AG	235-390	GT	GGG
(GTG)	 AG	496-688	GT	GGG
(GGG)	 AG	709-768	GT	GGG
(GGG)	 AG	789-799	GT	TGG
(AGG)	 AG	841-890	AA	AGA
-recovered GeneMark_model.109220_t, terminal, 841, 890
-recovered GeneMark_model.109220_t, internal, 24, 103
-recovered GeneMark_model.109220_t, internal, 144, 212
-recovered GeneMark_model.109220_t, internal, 235, 390
-recovered GeneMark_model.109220_t, internal, 496, 688
-recovered GeneMark_model.109220_t, internal, 709, 768
-recovered GeneMark_model.109220_t, internal, 789, 799
Couldn't classify 1, 103
Sorry, prediction Augustus_model.g41626.t1 fails validation.
(CAG)	 TG	1-103	GT	AGG
(GCG)	 AG	235-390	GT	GGG
(GTG)	 AG	496-603	GT	TGG
(AGG)	 AG	841-890	AA	AGA
-recovered Augustus_model.g41626.t1, terminal, 841, 890
-recovered Augustus_model.g41626.t1, internal, 235, 390
-recovered Augustus_model.g41626.t1, internal, 496, 603
Couldn't classify 1, 103
Couldn't classify 496, 602
Sorry, prediction pasa_asmbl_11689.p1 fails validation.
(CAG)	 TG	1-103	GT	AGG
(GCG)	 AG	235-390	GT	GGG
(GTG)	 AG	496-602	GG	CTG
-recovered pasa_asmbl_11689.p1, internal, 235, 390

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2623
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support