-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1337

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 231, 404
Sorry, prediction snap_scaffold_1337-snap.1-T1 fails validation.
(CAG)	 AG	231-404	GT	AGG
(TCA)	 AG	2261-2300	CG	GAC
-recovered snap_scaffold_1337-snap.1-T1, terminal, 2261, 2300
-recovered snap_scaffold_1337-snap.1-T1, internal, 231, 404

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2136, 2627
Sorry, prediction Augustus_model.g41625.t1 fails validation.
(ATG)	 AG	2136-2627		GG
Couldn't classify 573, 581
Couldn't classify 2096, 2615
Sorry, prediction GeneMark_model.109219_t fails validation.
(AGA)	 AG	573-581	GT	GAG
(AGA)	 AG	605-613	GT	GAG
(AGA)	 AG	661-669	GT	GAG
(AGA)	 AG	693-737	GT	GAG
(AGA)	 AG	765-773	GT	GAG
(AGT)	 AG	801-848	GT	CTG
(AAA)	 AG	876-881	GT	CTG
(GGA)	 AG	2096-2615	GC	CAG
-recovered GeneMark_model.109219_t, internal, 573, 581
-recovered GeneMark_model.109219_t, internal, 605, 613
-recovered GeneMark_model.109219_t, internal, 661, 669
-recovered GeneMark_model.109219_t, internal, 693, 737
-recovered GeneMark_model.109219_t, internal, 765, 773
-recovered GeneMark_model.109219_t, internal, 801, 848
-recovered GeneMark_model.109219_t, internal, 876, 881
-recovered GeneMark_model.109219_t, internal, 2096, 2615
Valid prediction for GlimmerHMM_glimmerT_62590-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2627
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support