-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1335

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1335-snap.1-T1
Couldn't classify 2013, 2093
Sorry, prediction GeneMark_model.109215_t fails validation.
(ATG)	 AT	1103-1176	GT	AGG
(GTG)	 AG	1199-1219	GT	AGG
(GTG)	 AG	1241-1264	GT	GTG
(AGG)	 AG	1291-1299	GT	GTG
(GAA)	 AG	1334-1363	GT	AGG
(AAG)	 AG	1627-1689	GT	GGG
(ATG)	 AG	1795-1806	GT	GGG
(GGG)	 AG	1831-1902	GT	AGG
(ATG)	 AG	1941-1952	GT	GGG
(GAG)	 AG	1974-1988	GT	AGG
(AGA)	 AG	2013-2093	GT	AAG
-recovered GeneMark_model.109215_t, initial, 1103, 1176
-recovered GeneMark_model.109215_t, initial, 1795, 1806
-recovered GeneMark_model.109215_t, initial, 1941, 1952
-recovered GeneMark_model.109215_t, internal, 1199, 1219
-recovered GeneMark_model.109215_t, internal, 1241, 1264
-recovered GeneMark_model.109215_t, internal, 1291, 1299
-recovered GeneMark_model.109215_t, internal, 1334, 1363
-recovered GeneMark_model.109215_t, internal, 1627, 1689
-recovered GeneMark_model.109215_t, internal, 1795, 1806
-recovered GeneMark_model.109215_t, internal, 1831, 1902
-recovered GeneMark_model.109215_t, internal, 1941, 1952
-recovered GeneMark_model.109215_t, internal, 1974, 1988
-recovered GeneMark_model.109215_t, internal, 2013, 2093

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109214_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2628
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support