-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1333

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62588-T1
Couldn't classify 507, 641
Sorry, prediction snap_scaffold_1333-snap.1-T1 fails validation.
(AGC)	 AG	507-641	GT	TGG
(ACT)	 AG	2506-2568	GC	AAG
-recovered snap_scaffold_1333-snap.1-T1, terminal, 2506, 2568
-recovered snap_scaffold_1333-snap.1-T1, internal, 507, 641
-recovered snap_scaffold_1333-snap.1-T1, internal, 2506, 2568

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 150, 187
Couldn't classify 1204, 1420
Sorry, prediction GeneMark_model.109213_t fails validation.
(AGA)	 AG	150-187	GT	CCG
(GAG)	 AG	237-276	GT	CAG
(CTA)	 AG	326-353	GT	CTG
(AAG)	 AG	565-623	GT	ATG
(AAC)	 AG	787-1179	GT	CTG
(AGA)	 AG	1204-1420	GT	GGG
-recovered GeneMark_model.109213_t, internal, 150, 187
-recovered GeneMark_model.109213_t, internal, 237, 276
-recovered GeneMark_model.109213_t, internal, 326, 353
-recovered GeneMark_model.109213_t, internal, 565, 623
-recovered GeneMark_model.109213_t, internal, 787, 1179
-recovered GeneMark_model.109213_t, internal, 1204, 1420

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2632
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support