-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1332

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 174, 280
Couldn't classify 2433, 2612
Sorry, prediction GeneMark_model.109212_t fails validation.
(GGT)	 AG	174-280	GT	GCG
(ACC)	 AG	699-705	GT	CCG
(ACC)	 AG	768-860	GT	TAG
(GTG)	 AG	2014-2228	GT	AGG
(GCA)	 AG	2253-2408	GT	AGG
(GCA)	 AG	2433-2612	GC	AGG
-recovered GeneMark_model.109212_t, internal, 174, 280
-recovered GeneMark_model.109212_t, internal, 699, 705
-recovered GeneMark_model.109212_t, internal, 768, 860
-recovered GeneMark_model.109212_t, internal, 2014, 2228
-recovered GeneMark_model.109212_t, internal, 2253, 2408
-recovered GeneMark_model.109212_t, internal, 2433, 2612
Couldn't classify 2059, 2523
Sorry, prediction snap_scaffold_1332-snap.1-T1 fails validation.
(GTG)	 AG	2059-2523	GT	AGG
-recovered snap_scaffold_1332-snap.1-T1, internal, 2059, 2523

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2637
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support