-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1330

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 129, 150
Couldn't classify 1757, 1847
Sorry, prediction GeneMark_model.109211_t fails validation.
(TCC)	 AG	129-150	GT	ATG
(AGA)	 AG	275-283	GC	GAG
(AGA)	 AG	307-341	GT	CAG
(CGG)	 AG	1212-1266	GT	CAG
(TGC)	 AG	1305-1331	GT	GAG
(AGA)	 AG	1381-1413	GT	GAG
(AGC)	 AG	1439-1519	GT	GAG
(CAG)	 AG	1547-1639	GT	GAG
(AGA)	 AG	1663-1680	GT	CAG
(AAA)	 AG	1723-1731	GT	GAG
(AGA)	 AG	1757-1847	GT	AGG
-recovered GeneMark_model.109211_t, internal, 129, 150
-recovered GeneMark_model.109211_t, internal, 275, 283
-recovered GeneMark_model.109211_t, internal, 307, 341
-recovered GeneMark_model.109211_t, internal, 1212, 1266
-recovered GeneMark_model.109211_t, internal, 1305, 1331
-recovered GeneMark_model.109211_t, internal, 1381, 1413
-recovered GeneMark_model.109211_t, internal, 1439, 1519
-recovered GeneMark_model.109211_t, internal, 1547, 1639
-recovered GeneMark_model.109211_t, internal, 1663, 1680
-recovered GeneMark_model.109211_t, internal, 1723, 1731
-recovered GeneMark_model.109211_t, internal, 1757, 1847

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2642
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support