-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_133

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 13138, 13173
Sorry, prediction GeneMark_model.106693_t fails validation.
(ATG)	 GG	12249-12310	GT	AGG
(AGA)	 AG	12983-12991	GT	GAG
(AAG)	 AG	13077-13112	GT	GAG
(AGA)	 AG	13138-13173	GT	GTG
-recovered GeneMark_model.106693_t, initial, 12249, 12310
-recovered GeneMark_model.106693_t, internal, 12983, 12991
-recovered GeneMark_model.106693_t, internal, 13077, 13112
-recovered GeneMark_model.106693_t, internal, 13138, 13173
Couldn't classify 409, 774
Sorry, prediction GeneMark_model.106692_t fails validation.
(AGA)	 AG	409-774	GT	CTG
(AAC)	 AG	1667-1741	GT	GTG
(GAG)	 AG	1764-1772	GT	GTG
(AAG)	 AG	1926-1943	GT	GGG
(TAG)	 AG	1978-2007	GT	GGG
(GAT)	 AG	2036-2080	GT	GGG
(GGG)	 AG	2101-2112	GT	GGG
(GAC)	 AG	2133-2228	GT	GGG
(GAG)	 AG	2250-2258	GT	GGG
(GAA)	 AG	2281-2289	GT	GGG
(GAA)	 AG	2312-2320	GT	GGG
(GAA)	 AG	2343-2351	GT	GGG
(GAA)	 AG	2374-2382	GT	GGG
(GAG)	 AG	2421-2447	GT	GAG
(GAG)	 AG	2472-2561	GT	GAG
(GAG)	 AG	2597-2662	GT	AGG
(AGA)	 AG	5354-5380	GT	GAG
(AGA)	 AG	5403-5429	GT	GAG
(AGA)	 AG	5452-5484	GT	GAG
(GGA)	 AG	5517-5534	GT	GAG
(GAG)	 AG	5572-5580	GT	GGG
(ACA)	 AG	5851-5926	AG	AAA
-recovered GeneMark_model.106692_t, terminal, 5851, 5926
-recovered GeneMark_model.106692_t, internal, 409, 774
-recovered GeneMark_model.106692_t, internal, 1667, 1741
-recovered GeneMark_model.106692_t, internal, 1764, 1772
-recovered GeneMark_model.106692_t, internal, 1926, 1943
-recovered GeneMark_model.106692_t, internal, 1978, 2007
-recovered GeneMark_model.106692_t, internal, 2036, 2080
-recovered GeneMark_model.106692_t, internal, 2101, 2112
-recovered GeneMark_model.106692_t, internal, 2133, 2228
-recovered GeneMark_model.106692_t, internal, 2250, 2258
-recovered GeneMark_model.106692_t, internal, 2281, 2289
-recovered GeneMark_model.106692_t, internal, 2312, 2320
-recovered GeneMark_model.106692_t, internal, 2343, 2351
-recovered GeneMark_model.106692_t, internal, 2374, 2382
-recovered GeneMark_model.106692_t, internal, 2421, 2447
-recovered GeneMark_model.106692_t, internal, 2472, 2561
-recovered GeneMark_model.106692_t, internal, 2597, 2662
-recovered GeneMark_model.106692_t, internal, 5354, 5380
-recovered GeneMark_model.106692_t, internal, 5403, 5429
-recovered GeneMark_model.106692_t, internal, 5452, 5484
-recovered GeneMark_model.106692_t, internal, 5517, 5534
-recovered GeneMark_model.106692_t, internal, 5572, 5580
Couldn't classify 1560, 1703
Couldn't classify 12696, 12765
Sorry, prediction snap_scaffold_133-snap.1-T1 fails validation.
(GCC)	 AG	1560-1703	GT	AGG
(AAG)	 AG	12219-12310	GT	AGG
(TTC)	 AG	12696-12765	GT	CTG
-recovered snap_scaffold_133-snap.1-T1, internal, 1560, 1703
-recovered snap_scaffold_133-snap.1-T1, internal, 12219, 12310
-recovered snap_scaffold_133-snap.1-T1, internal, 12696, 12765

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1050, 1195
Sorry, prediction GlimmerHMM_glimmerT_61360-T1 fails validation.
(ACG)	 AG	1050-1195	GT	GGG
(CTT)	 AG	11702-11770	GC	GAG
-recovered GlimmerHMM_glimmerT_61360-T1, terminal, 11702, 11770
-recovered GlimmerHMM_glimmerT_61360-T1, internal, 1050, 1195
-recovered GlimmerHMM_glimmerT_61360-T1, internal, 11702, 11770

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 13377
-exon list size: 69


building trellis

1.4    
2.8    
4.2    
5.6    
7.0    
8.5    
9.9    
11.3    
12.7    
14.1    
15.5    
16.9    
18.3    
19.7    
21.1    
22.5    
23.9    
25.4    
26.8    
28.2    
29.6    
31.0    
32.4    
33.8    
35.2    
36.6    
38.0    
39.4    
40.8    
42.3    
43.7    
45.1    
46.5    
47.9    
49.3    
50.7    
52.1    
53.5    
54.9    
56.3    
57.7    
59.2    
60.6    
62.0    
63.4    
64.8    
66.2    
67.6    
69.0    
70.4    
71.8    
73.2    
74.6    
76.1    
77.5    
78.9    
80.3    
81.7    
83.1    
84.5    
85.9    
87.3    
88.7    
90.1    
91.5    
93.0    
94.4    
95.8    
97.2    
98.6    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support