-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1329

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1329-snap.1-T1
add_exon() Sorry, snap_scaffold_1329-snap.1-T1 273-462-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2249, 2332
Couldn't classify 2475, 2625
Sorry, prediction GeneMark_model.109210_t fails validation.
(GGA)	 AG	2249-2332	GT	CTG
(GGA)	 AG	2362-2445	GT	CTG
(GGA)	 AG	2475-2625	GT	GAG
-recovered GeneMark_model.109210_t, internal, 2249, 2332
-recovered GeneMark_model.109210_t, internal, 2362, 2445
-recovered GeneMark_model.109210_t, internal, 2475, 2625

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2643
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support