-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1327

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 546, 812
Sorry, prediction snap_scaffold_1327-snap.1-T1 fails validation.
(AGG)	 AG	546-812	GT	GGG
(ACA)	 AG	1693-1796	GA	GAG
-recovered snap_scaffold_1327-snap.1-T1, terminal, 1693, 1796
-recovered snap_scaffold_1327-snap.1-T1, internal, 546, 812
Couldn't classify 420, 461
Couldn't classify 1292, 1310
Sorry, prediction GeneMark_model.109209_t fails validation.
(GAG)	 AG	420-461	GT	GGG
(GTG)	 AG	513-527	GT	GAG
(AAA)	 AG	564-668	GT	GAG
(GGG)	 AG	695-754	GT	GAG
(AGA)	 AG	776-832	GT	GGG
(AGA)	 AG	1172-1204	GT	GAG
(GGT)	 AG	1292-1310	GT	GTG
-recovered GeneMark_model.109209_t, internal, 420, 461
-recovered GeneMark_model.109209_t, internal, 513, 527
-recovered GeneMark_model.109209_t, internal, 564, 668
-recovered GeneMark_model.109209_t, internal, 695, 754
-recovered GeneMark_model.109209_t, internal, 776, 832
-recovered GeneMark_model.109209_t, internal, 1172, 1204
-recovered GeneMark_model.109209_t, internal, 1292, 1310

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2649
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support