-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1326

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 391, 396
Sorry, prediction GeneMark_model.109207_t fails validation.
(CTG)	 AG	391-396	GT	AGG
(GTT)	 AG	792-902	GT	GGG
(GGA)	 AG	1622-1630	GT	AGG
(AGA)	 AG	1668-1800	TT	AAT
-recovered GeneMark_model.109207_t, terminal, 1668, 1800
-recovered GeneMark_model.109207_t, internal, 391, 396
-recovered GeneMark_model.109207_t, internal, 792, 902
-recovered GeneMark_model.109207_t, internal, 1622, 1630

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 22, 204
Sorry, prediction GeneMark_model.109208_t fails validation.
(ACC)	 AG	22-204	GT	AGG
(CGC)	 AG	371-435	GT	AGG
(GCG)	 AG	472-519	AA	GAA
-recovered GeneMark_model.109208_t, terminal, 472, 519
-recovered GeneMark_model.109208_t, internal, 22, 204
-recovered GeneMark_model.109208_t, internal, 371, 435
Valid prediction for GlimmerHMM_glimmerT_62587-T1
Couldn't classify 1673, 1939
Sorry, prediction snap_scaffold_1326-snap.1-T1 fails validation.
(ATG)	 CC	877-963	GT	ATG
(GAG)	 AG	1673-1939	GT	AAG
-recovered snap_scaffold_1326-snap.1-T1, initial, 877, 963
-recovered snap_scaffold_1326-snap.1-T1, internal, 1673, 1939

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2655
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support