-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1325

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1, 89
Couldn't classify 2232, 2655
Sorry, prediction HiQ_model.g41624.t1 fails validation.
(TGG)	 AC	1-89	GT	AGG
(CGC)	 AG	609-842	GT	AGG
(AAC)	 AG	1444-1603	GT	AGG
(TCT)	 AG	2031-2090	GT	ATG
(ATT)	 AG	2232-2655		AC
-recovered HiQ_model.g41624.t1, internal, 609, 842
-recovered HiQ_model.g41624.t1, internal, 1444, 1603
-recovered HiQ_model.g41624.t1, internal, 2031, 2090
Couldn't classify 6, 89
Couldn't classify 2232, 2653
Sorry, prediction pasa_asmbl_11686.p1 fails validation.
(CTG)	 TC	6-89	GT	AGG
(CGC)	 AG	609-842	GT	AGG
(AAC)	 AG	1444-1603	GT	AGG
(TCT)	 AG	2031-2090	GT	ATG
(ATT)	 AG	2232-2653	AC	TGA
-recovered pasa_asmbl_11686.p1, internal, 609, 842
-recovered pasa_asmbl_11686.p1, internal, 1444, 1603
-recovered pasa_asmbl_11686.p1, internal, 2031, 2090
Couldn't classify 18, 89
Couldn't classify 2232, 2615
Sorry, prediction snap_scaffold_1325-snap.1-T1 fails validation.
(GAA)	 AG	18-89	GT	AGG
(CGC)	 AG	609-842	GT	AGG
(TAC)	 AG	1513-1603	GT	AGG
(TCT)	 AG	2031-2111	GT	AGG
(ATT)	 AG	2232-2615	GT	AGG
-recovered snap_scaffold_1325-snap.1-T1, internal, 18, 89
-recovered snap_scaffold_1325-snap.1-T1, internal, 609, 842
-recovered snap_scaffold_1325-snap.1-T1, internal, 1513, 1603
-recovered snap_scaffold_1325-snap.1-T1, internal, 2031, 2111
-recovered snap_scaffold_1325-snap.1-T1, internal, 2232, 2615

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62586-T1
Couldn't classify 256, 303
Couldn't classify 1848, 2188
Sorry, prediction snap_scaffold_1325-snap.2-T1 fails validation.
(TAA)	 AG	256-303	GT	AGG
(ACA)	 AG	371-473	GT	ATG
(CTG)	 AG	491-568	GT	TGG
(CTC)	 AG	1111-1275	GT	GGG
(AGT)	 AG	1848-2188	GT	GAG
-recovered snap_scaffold_1325-snap.2-T1, internal, 256, 303
-recovered snap_scaffold_1325-snap.2-T1, internal, 371, 473
-recovered snap_scaffold_1325-snap.2-T1, internal, 491, 568
-recovered snap_scaffold_1325-snap.2-T1, internal, 1111, 1275
-recovered snap_scaffold_1325-snap.2-T1, internal, 1848, 2188
Couldn't classify 371, 408
Sorry, prediction GeneMark_model.109206_t fails validation.
(ACA)	 AG	371-408	GT	GAG
(ACA)	 AG	541-618	GT	CTG
(ACA)	 AG	1219-1239	GT	ACG
(AGG)	 AG	1261-1275	GT	GGG
(GGA)	 AG	1299-1367	GT	AGG
(GGG)	 AG	1418-1429	GT	GGG
(GAG)	 AG	1457-1486	GT	AGG
(CGA)	 AG	1509-1514	GT	ATG
(GAA)	 AG	1537-1604	GT	CTG
(GTT)	 AG	1800-2020	GT	CTG
(AGC)	 AG	2044-2087	GT	GAG
(AGG)	 AG	2118-2123	GT	GAG
(AGA)	 AG	2149-2220	GT	GGG
(GAG)	 AG	2251-2307	GT	GAG
(AGG)	 AG	2336-2350	GT	GGG
(GAG)	 AG	2374-2455	AT	AAA
-recovered GeneMark_model.109206_t, terminal, 2374, 2455
-recovered GeneMark_model.109206_t, internal, 371, 408
-recovered GeneMark_model.109206_t, internal, 541, 618
-recovered GeneMark_model.109206_t, internal, 1219, 1239
-recovered GeneMark_model.109206_t, internal, 1261, 1275
-recovered GeneMark_model.109206_t, internal, 1299, 1367
-recovered GeneMark_model.109206_t, internal, 1418, 1429
-recovered GeneMark_model.109206_t, internal, 1457, 1486
-recovered GeneMark_model.109206_t, internal, 1509, 1514
-recovered GeneMark_model.109206_t, internal, 1537, 1604
-recovered GeneMark_model.109206_t, internal, 1800, 2020
-recovered GeneMark_model.109206_t, internal, 2044, 2087
-recovered GeneMark_model.109206_t, internal, 2118, 2123
-recovered GeneMark_model.109206_t, internal, 2149, 2220
-recovered GeneMark_model.109206_t, internal, 2251, 2307
-recovered GeneMark_model.109206_t, internal, 2336, 2350

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2615, rend_intergenic: 468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2655
-exon list size: 58


building trellis

1.7    
3.3    
5.0    
6.7    
8.3    
10.0    
11.7    
13.3    
15.0    
16.7    
18.3    
20.0    
21.7    
23.3    
25.0    
26.7    
28.3    
30.0    
31.7    
33.3    
35.0    
36.7    
38.3    
40.0    
41.7    
43.3    
45.0    
46.7    
48.3    
50.0    
51.7    
53.3    
55.0    
56.7    
58.3    
60.0    
61.7    
63.3    
65.0    
66.7    
68.3    
70.0    
71.7    
73.3    
75.0    
76.7    
78.3    
80.0    
81.7    
83.3    
85.0    
86.7    
88.3    
90.0    
91.7    
93.3    
95.0    
96.7    
98.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2615, rend_intergenic: 468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support