-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1324

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 937, 977
Sorry, prediction snap_scaffold_1324-snap.1-T1 fails validation.
(ATG)	 AG	45-107	GT	AAG
(CAG)	 AG	257-376	GT	GCG
(GTC)	 AG	937-977	GT	CGG
-recovered snap_scaffold_1324-snap.1-T1, initial, 45, 107
-recovered snap_scaffold_1324-snap.1-T1, internal, 45, 107
-recovered snap_scaffold_1324-snap.1-T1, internal, 257, 376
-recovered snap_scaffold_1324-snap.1-T1, internal, 937, 977
Couldn't classify 257, 376
Couldn't classify 2488, 2496
Sorry, prediction GeneMark_model.109205_t fails validation.
(CAG)	 AG	257-376	GT	GCG
(GTC)	 AG	937-964	GT	GAG
(GGT)	 AG	2452-2460	GT	GTG
(AGA)	 AG	2488-2496	GT	GGG
-recovered GeneMark_model.109205_t, internal, 257, 376
-recovered GeneMark_model.109205_t, internal, 937, 964
-recovered GeneMark_model.109205_t, internal, 2452, 2460
-recovered GeneMark_model.109205_t, internal, 2488, 2496

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2655
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support