-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1323

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 137, 253
Sorry, prediction GeneMark_model.109203_t fails validation.
(CAG)	 AG	137-253	GT	TGG
(ACA)	 AG	285-364	GT	GAG
(AAA)	 AG	397-405	GT	GAG
(AGA)	 AG	447-516	AT	AGA
add_exon() Sorry, GeneMark_model.109203_t 285-364-terminal-2 is invalid.
-recovered GeneMark_model.109203_t, terminal, 285, 364
-recovered GeneMark_model.109203_t, terminal, 397, 405
-recovered GeneMark_model.109203_t, terminal, 447, 516
-recovered GeneMark_model.109203_t, internal, 137, 253
-recovered GeneMark_model.109203_t, internal, 285, 364
-recovered GeneMark_model.109203_t, internal, 397, 405
Couldn't classify 137, 253
Couldn't classify 2009, 2088
Sorry, prediction snap_scaffold_1323-snap.2-T1 fails validation.
(CAG)	 AG	137-253	GT	TGG
(GCT)	 AG	1856-1941	GT	ACG
(ATC)	 AG	2009-2088	GT	AGG
-recovered snap_scaffold_1323-snap.2-T1, internal, 137, 253
-recovered snap_scaffold_1323-snap.2-T1, internal, 1856, 1941
-recovered snap_scaffold_1323-snap.2-T1, internal, 2009, 2088

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 651, 795
Couldn't classify 2383, 2565
Sorry, prediction Augustus_model.g41623.t1 fails validation.
(ATC)	 AG	651-795	GT	GGG
(AGC)	 AG	2383-2565	GT	AGG
-recovered Augustus_model.g41623.t1, internal, 651, 795
-recovered Augustus_model.g41623.t1, internal, 2383, 2565
Couldn't classify 651, 781
Sorry, prediction GlimmerHMM_glimmerT_62585-T1 fails validation.
(ATC)	 AG	651-781	GT	GGG
(AGC)	 AG	2383-2554	CG	GAC
-recovered GlimmerHMM_glimmerT_62585-T1, terminal, 2383, 2554
-recovered GlimmerHMM_glimmerT_62585-T1, internal, 651, 781
Couldn't classify 651, 795
Couldn't classify 2383, 2565
Sorry, prediction snap_scaffold_1323-snap.1-T1 fails validation.
(ATC)	 AG	651-795	GT	GGG
(AGC)	 AG	1256-1396	GT	AGG
(AGC)	 AG	2383-2565	GT	AGG
-recovered snap_scaffold_1323-snap.1-T1, internal, 651, 795
-recovered snap_scaffold_1323-snap.1-T1, internal, 1256, 1396
-recovered snap_scaffold_1323-snap.1-T1, internal, 2383, 2565
Couldn't classify 651, 781
Sorry, prediction GeneMark_model.109204_t fails validation.
(ATC)	 AG	651-781	GT	GGG
(AGT)	 AG	1171-1251	GT	TTG
(GAG)	 AG	1296-1406	GT	GAG
(AGG)	 AG	1467-1484	GT	GAG
(AAG)	 AG	1530-1613	GT	GAG
(GAG)	 AG	1645-1747	GA	GAG
-recovered GeneMark_model.109204_t, terminal, 1645, 1747
-recovered GeneMark_model.109204_t, internal, 651, 781
-recovered GeneMark_model.109204_t, internal, 1171, 1251
-recovered GeneMark_model.109204_t, internal, 1296, 1406
-recovered GeneMark_model.109204_t, internal, 1467, 1484
-recovered GeneMark_model.109204_t, internal, 1530, 1613
Couldn't classify 651, 795
Couldn't classify 2383, 2564
Sorry, prediction pasa_asmbl_11683.p1 fails validation.
(ATC)	 AG	651-795	GT	GGG
(AGC)	 AG	2383-2564	GG	CAG
-recovered pasa_asmbl_11683.p1, internal, 651, 795

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2010, rend_intergenic: 137  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2660
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2010, rend_intergenic: 137  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support