-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1322

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 75, 97
Couldn't classify 2351, 2450
Sorry, prediction GeneMark_model.109202_t fails validation.
(GCT)	 AG	75-97	GT	TGG
(GTC)	 AG	1770-1890	GC	ATG
(GGA)	 AG	1979-2054	GT	AGG
(GAA)	 AG	2351-2450	GT	GTG
-recovered GeneMark_model.109202_t, internal, 75, 97
-recovered GeneMark_model.109202_t, internal, 1770, 1890
-recovered GeneMark_model.109202_t, internal, 1979, 2054
-recovered GeneMark_model.109202_t, internal, 2351, 2450
Couldn't classify 529, 618
Couldn't classify 2325, 2450
Sorry, prediction Augustus_model.g41622.t1 fails validation.
(CGA)	 AG	529-618	GT	AAG
(CGA)	 AG	1127-1216	GT	AAG
(GTC)	 AG	1770-1895	GT	AGG
(AAG)	 AG	2325-2450	GT	GTG
-recovered Augustus_model.g41622.t1, internal, 529, 618
-recovered Augustus_model.g41622.t1, internal, 1127, 1216
-recovered Augustus_model.g41622.t1, internal, 1770, 1895
-recovered Augustus_model.g41622.t1, internal, 2325, 2450
Couldn't classify 529, 618
Couldn't classify 2325, 2450
Sorry, prediction snap_scaffold_1322-snap.1-T1 fails validation.
(CGA)	 AG	529-618	GT	AAG
(CGA)	 AG	1127-1216	GT	AAG
(GTC)	 AG	1770-1895	GT	AGG
(AAG)	 AG	2325-2450	GT	GTG
-recovered snap_scaffold_1322-snap.1-T1, internal, 529, 618
-recovered snap_scaffold_1322-snap.1-T1, internal, 1127, 1216
-recovered snap_scaffold_1322-snap.1-T1, internal, 1770, 1895
-recovered snap_scaffold_1322-snap.1-T1, internal, 2325, 2450

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2663
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support