-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1321

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for CodingQuarry_transcript_13335-T1
Couldn't classify 419, 530
Sorry, prediction snap_scaffold_1321-snap.1-T1 fails validation.
(GGC)	 AG	419-530	GT	AGG
(ACG)	 AG	1767-1932	CC	AGC
-recovered snap_scaffold_1321-snap.1-T1, terminal, 1767, 1932
-recovered snap_scaffold_1321-snap.1-T1, internal, 419, 530
Valid prediction for HiQ_model.g41621.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 778, 932
Sorry, prediction GeneMark_model.109201_t fails validation.
(GGA)	 AG	778-932	GC	GGG
(AGG)	 AG	955-984	GT	GGG
(GAG)	 AG	1010-1018	GC	GGG
(AGG)	 AG	1041-1052	GT	GGG
(AGG)	 AG	1079-1327	GT	GTG
(GAG)	 AG	1412-1444	GC	GGG
(GAG)	 AG	1467-1511	GT	GGG
(AGG)	 AG	1539-1553	GT	GGG
(AGG)	 AG	1581-1730	GT	GGG
(AAG)	 AG	1761-1889	GT	GGG
(AGA)	 AG	2128-2164	AC	GAA
-recovered GeneMark_model.109201_t, terminal, 2128, 2164
-recovered GeneMark_model.109201_t, internal, 778, 932
-recovered GeneMark_model.109201_t, internal, 955, 984
-recovered GeneMark_model.109201_t, internal, 1010, 1018
-recovered GeneMark_model.109201_t, internal, 1041, 1052
-recovered GeneMark_model.109201_t, internal, 1079, 1327
-recovered GeneMark_model.109201_t, internal, 1412, 1444
-recovered GeneMark_model.109201_t, internal, 1467, 1511
-recovered GeneMark_model.109201_t, internal, 1539, 1553
-recovered GeneMark_model.109201_t, internal, 1581, 1730
-recovered GeneMark_model.109201_t, internal, 1761, 1889
Valid prediction for GlimmerHMM_glimmerT_62584-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2667
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support