-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1320

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 532, 564
Sorry, prediction Augustus_model.g41620.t1 fails validation.
(TGT)	 AG	532-564	GT	GGG
(TCG)	 AG	656-750	CA	AGC
-recovered Augustus_model.g41620.t1, terminal, 656, 750
-recovered Augustus_model.g41620.t1, internal, 532, 564
Couldn't classify 35, 40
Couldn't classify 1380, 1500
Sorry, prediction GeneMark_model.109200_t fails validation.
(GAG)	 AG	35-40	GT	GGG
(AGA)	 AG	64-93	GT	AGG
(AAC)	 AG	138-223	GT	CAG
(TGT)	 AG	532-588	GT	CAG
(TCG)	 AG	656-746	GT	AGG
(GGG)	 AG	798-860	GT	CTG
(AGG)	 AG	1380-1500	GT	AGG
-recovered GeneMark_model.109200_t, internal, 35, 40
-recovered GeneMark_model.109200_t, internal, 64, 93
-recovered GeneMark_model.109200_t, internal, 138, 223
-recovered GeneMark_model.109200_t, internal, 532, 588
-recovered GeneMark_model.109200_t, internal, 656, 746
-recovered GeneMark_model.109200_t, internal, 798, 860
-recovered GeneMark_model.109200_t, internal, 1380, 1500
Couldn't classify 1308, 1500
Sorry, prediction snap_scaffold_1320-snap.1-T1 fails validation.
(ATG)	 CC	392-404	GT	AAG
(TGT)	 AG	532-564	GT	GGG
(TCG)	 AG	656-746	GT	AGG
(GTC)	 AG	1308-1500	GT	AGG
-recovered snap_scaffold_1320-snap.1-T1, initial, 392, 404
-recovered snap_scaffold_1320-snap.1-T1, internal, 532, 564
-recovered snap_scaffold_1320-snap.1-T1, internal, 656, 746
-recovered snap_scaffold_1320-snap.1-T1, internal, 1308, 1500
add_exon() Sorry, GlimmerHMM_glimmerT_62583-T1 1325-1752-single-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2669
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support