-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_132

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40814.t1
Couldn't classify 13322, 13439
Sorry, prediction GeneMark_model.106691_t fails validation.
(ATG)	 AG	13213-13220	GT	CCG
(ACA)	 AG	13322-13439	GT	ATG
-recovered GeneMark_model.106691_t, initial, 13213, 13220
-recovered GeneMark_model.106691_t, internal, 13213, 13220
-recovered GeneMark_model.106691_t, internal, 13322, 13439
Valid prediction for GlimmerHMM_glimmerT_61358-T1
Valid prediction for GeneMark_model.106690_t
Couldn't classify 419, 478
Sorry, prediction GeneMark_model.106688_t fails validation.
(AGA)	 AG	419-478	GT	GAG
(GGA)	 AG	501-533	GT	AGG
(AGA)	 AG	1973-2012	GT	GAG
add_exon() Sorry, GeneMark_model.106688_t 419-478-terminal-1 is invalid.
-recovered GeneMark_model.106688_t, terminal, 419, 478
-recovered GeneMark_model.106688_t, terminal, 1973, 2012
-recovered GeneMark_model.106688_t, internal, 419, 478
-recovered GeneMark_model.106688_t, internal, 501, 533
-recovered GeneMark_model.106688_t, internal, 1973, 2012
Valid prediction for Augustus_model.g40813.t1
Couldn't classify 12817, 12905
Sorry, prediction GlimmerHMM_glimmerT_61359-T1 fails validation.
(ATG)	 AC	12268-12638	GT	ACG
(TCT)	 AG	12817-12905	GT	GCG
-recovered GlimmerHMM_glimmerT_61359-T1, initial, 12268, 12638
-recovered GlimmerHMM_glimmerT_61359-T1, internal, 12817, 12905
Valid prediction for snap_scaffold_132-snap.1-T1
Sorry, intron length (4) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106689_t
Couldn't classify 7240, 7435
Sorry, prediction snap_scaffold_132-snap.2-T1 fails validation.
(ATG)	 AA	7174-7180	GT	ACG
(GAA)	 AG	7240-7435	GT	GAG
-recovered snap_scaffold_132-snap.2-T1, initial, 7174, 7180
-recovered snap_scaffold_132-snap.2-T1, internal, 7240, 7435
Valid prediction for snap_scaffold_132-snap.3-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12940, rend_intergenic: 6013  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 13447
-exon list size: 78


building trellis

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2.5    
3.8    
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7.5    
8.8    
10.0    
11.2    
12.5    
13.8    
15.0    
16.2    
17.5    
18.8    
20.0    
21.2    
22.5    
23.8    
25.0    
26.2    
27.5    
28.7    
30.0    
31.2    
32.5    
33.8    
35.0    
36.2    
37.5    
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40.0    
41.2    
42.5    
43.8    
45.0    
46.2    
47.5    
48.8    
50.0    
51.2    
52.5    
53.8    
55.0    
56.2    
57.5    
58.8    
60.0    
61.3    
62.5    
63.7    
65.0    
66.2    
67.5    
68.8    
70.0    
71.2    
72.5    
73.8    
75.0    
76.2    
77.5    
78.8    
80.0    
81.2    
82.5    
83.8    
85.0    
86.2    
87.5    
88.8    
90.0    
91.2    
92.5    
93.8    
95.0    
96.2    
97.5    
98.8    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 12940, rend_intergenic: 6013  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support