-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1319

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1136, 1150
Couldn't classify 1603, 1791
Sorry, prediction GeneMark_model.109199_t fails validation.
(AGA)	 AG	1136-1150	GT	GAG
(AGA)	 AG	1183-1356	GT	GGG
(AGA)	 AG	1381-1410	GT	GGG
(AGA)	 AG	1431-1442	GT	ATG
(GGG)	 AG	1463-1534	GT	GGG
(AGA)	 AG	1557-1580	GT	ATG
(AGA)	 AG	1603-1791	GT	GAG
-recovered GeneMark_model.109199_t, internal, 1136, 1150
-recovered GeneMark_model.109199_t, internal, 1183, 1356
-recovered GeneMark_model.109199_t, internal, 1381, 1410
-recovered GeneMark_model.109199_t, internal, 1431, 1442
-recovered GeneMark_model.109199_t, internal, 1463, 1534
-recovered GeneMark_model.109199_t, internal, 1557, 1580
-recovered GeneMark_model.109199_t, internal, 1603, 1791
Valid prediction for snap_scaffold_1319-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2669
-exon list size: 18


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support