-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1317

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 106, 142
Couldn't classify 2619, 2634
Sorry, prediction GeneMark_model.109198_t fails validation.
(CTG)	 AG	106-142	GT	GAG
(TGT)	 AG	174-203	GT	GGG
(GCA)	 AG	2272-2289	GC	AGG
(GAG)	 AG	2312-2425	GT	CAG
(CCC)	 AG	2619-2634	GT	AGG
-recovered GeneMark_model.109198_t, terminal, 106, 142
-recovered GeneMark_model.109198_t, internal, 106, 142
-recovered GeneMark_model.109198_t, internal, 174, 203
-recovered GeneMark_model.109198_t, internal, 2272, 2289
-recovered GeneMark_model.109198_t, internal, 2312, 2425
-recovered GeneMark_model.109198_t, internal, 2619, 2634
Couldn't classify 2233, 2425
Couldn't classify 2566, 2634
Sorry, prediction snap_scaffold_1317-snap.1-T1 fails validation.
(ATT)	 AG	2233-2425	GT	CAG
(CTG)	 AG	2566-2634	GT	AGG
-recovered snap_scaffold_1317-snap.1-T1, internal, 2233, 2425
-recovered snap_scaffold_1317-snap.1-T1, internal, 2566, 2634
Valid prediction for GlimmerHMM_glimmerT_62582-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2678
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support