-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1316

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1646, 1816
Sorry, prediction GeneMark_model.109197_t fails validation.
(ATG)	 CC	1284-1294	GT	TTG
(AGG)	 AG	1646-1816	GT	ATG
-recovered GeneMark_model.109197_t, initial, 1284, 1294
-recovered GeneMark_model.109197_t, internal, 1646, 1816

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2638, 2670
Sorry, prediction GeneMark_model.109196_t fails validation.
(ATG)	 GG	1677-1732	GT	GAG
(AGA)	 AG	1756-1923	GT	GGG
(AAC)	 AG	1955-1963	GT	GCG
(TGA)	 AG	2007-2030	GT	CAG
(AGG)	 AG	2068-2076	GT	AGG
(AGC)	 AG	2117-2122	GT	GGG
(ACG)	 AG	2638-2670	GT	GGG
-recovered GeneMark_model.109196_t, initial, 1677, 1732
-recovered GeneMark_model.109196_t, terminal, 2068, 2076
-recovered GeneMark_model.109196_t, internal, 1756, 1923
-recovered GeneMark_model.109196_t, internal, 1955, 1963
-recovered GeneMark_model.109196_t, internal, 2007, 2030
-recovered GeneMark_model.109196_t, internal, 2068, 2076
-recovered GeneMark_model.109196_t, internal, 2117, 2122
-recovered GeneMark_model.109196_t, internal, 2638, 2670

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2678
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support