-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1315

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1865, 1898
Sorry, prediction snap_scaffold_1315-snap.1-T1 fails validation.
(ATG)	 GG	894-981	GT	GAG
(ATG)	 AG	1063-1120	GT	AGG
(GAC)	 AG	1865-1898	GT	GGG
-recovered snap_scaffold_1315-snap.1-T1, initial, 894, 981
add_exon() Sorry, snap_scaffold_1315-snap.1-T1 1063-1120-initial-1 is invalid.
-recovered snap_scaffold_1315-snap.1-T1, initial, 1063, 1120
-recovered snap_scaffold_1315-snap.1-T1, internal, 1063, 1120
-recovered snap_scaffold_1315-snap.1-T1, internal, 1865, 1898
Couldn't classify 325, 366
Sorry, prediction GeneMark_model.109195_t fails validation.
(GGG)	 AG	325-366	GT	GGG
(GGA)	 AG	412-423	GT	AGG
(AGC)	 AG	487-522	GT	CGG
(GAG)	 AG	754-765	GT	GGG
(GGG)	 AG	789-845	GT	AGG
(GAG)	 AG	866-874	GT	GGG
(GAA)	 AG	899-992	GT	CAG
(GAC)	 AG	1865-1888	CC	AAC
-recovered GeneMark_model.109195_t, terminal, 1865, 1888
-recovered GeneMark_model.109195_t, internal, 325, 366
-recovered GeneMark_model.109195_t, internal, 412, 423
-recovered GeneMark_model.109195_t, internal, 487, 522
-recovered GeneMark_model.109195_t, internal, 754, 765
-recovered GeneMark_model.109195_t, internal, 789, 845
-recovered GeneMark_model.109195_t, internal, 866, 874
-recovered GeneMark_model.109195_t, internal, 899, 992

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2681
-exon list size: 23


building trellis

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36.0    
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96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support