-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1314

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 756, 767
Sorry, prediction GeneMark_model.109193_t fails validation.
(CAG)	 AG	756-767	GT	GGG
(GGC)	 AG	792-869	GT	AGG
(GCA)	 AG	898-933	GT	AGG
(AGG)	 AG	964-1263	GT	GAG
(GGA)	 AG	1287-1310	GC	GGG
(AGA)	 AG	1340-1399	GT	GAG
(GGA)	 AG	1433-1523	GA	AGG
-recovered GeneMark_model.109193_t, terminal, 1433, 1523
-recovered GeneMark_model.109193_t, internal, 756, 767
-recovered GeneMark_model.109193_t, internal, 792, 869
-recovered GeneMark_model.109193_t, internal, 898, 933
-recovered GeneMark_model.109193_t, internal, 964, 1263
-recovered GeneMark_model.109193_t, internal, 1287, 1310
-recovered GeneMark_model.109193_t, internal, 1340, 1399
Couldn't classify 695, 1263
Sorry, prediction snap_scaffold_1314-snap.1-T1 fails validation.
(ATT)	 AG	695-1263	GT	GAG
-recovered snap_scaffold_1314-snap.1-T1, internal, 695, 1263

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62581-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62581-T1 235-620-terminal-1 is invalid.
Couldn't classify 291, 362
Sorry, prediction GeneMark_model.109194_t fails validation.
(GCC)	 AG	291-362	GC	AGG
(AGG)	 AG	385-390	GT	CAG
(GCT)	 AG	411-467	GT	AAG
(GAG)	 AG	747-770	GT	TTG
(GAT)	 AG	821-842	GG	AGG
-recovered GeneMark_model.109194_t, terminal, 821, 842
-recovered GeneMark_model.109194_t, internal, 291, 362
-recovered GeneMark_model.109194_t, internal, 385, 390
-recovered GeneMark_model.109194_t, internal, 411, 467
-recovered GeneMark_model.109194_t, internal, 747, 770
Couldn't classify 235, 498
Sorry, prediction snap_scaffold_1314-snap.2-T1 fails validation.
(GTC)	 AG	235-498	GT	CAG
-recovered snap_scaffold_1314-snap.2-T1, internal, 235, 498

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2684
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support