-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1313

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109191_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 153, 208
Sorry, prediction snap_scaffold_1313-snap.1-T1 fails validation.
(AAG)	 AG	153-208	GT	AGG
(GGA)	 AG	608-903	TG	GAT
-recovered snap_scaffold_1313-snap.1-T1, terminal, 608, 903
-recovered snap_scaffold_1313-snap.1-T1, internal, 153, 208
Valid prediction for GlimmerHMM_glimmerT_62580-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62580-T1 608-903-terminal-1 is invalid.
Valid prediction for GeneMark_model.109192_t
add_exon() Sorry, GeneMark_model.109192_t 153-358-terminal-1 is invalid.
Couldn't classify 153, 208
Sorry, prediction Augustus_model.g41619.t1 fails validation.
(AAG)	 AG	153-208	GT	AGG
(GGA)	 AG	608-903	TG	GAT
-recovered Augustus_model.g41619.t1, terminal, 608, 903
-recovered Augustus_model.g41619.t1, internal, 153, 208
Couldn't classify 2525, 2671
Sorry, prediction GeneMark_model.109190_t fails validation.
(ATG)	 CG	1801-1859	GT	TTG
(ACC)	 AG	1900-1959	GT	GGG
(GAC)	 AG	2525-2671	GT	CCG
-recovered GeneMark_model.109190_t, initial, 1801, 1859
-recovered GeneMark_model.109190_t, internal, 1900, 1959
-recovered GeneMark_model.109190_t, internal, 2525, 2671

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2685
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support