-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1312

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41618.t1
Valid prediction for snap_scaffold_1312-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_62578-T1
Valid prediction for GlimmerHMM_glimmerT_62579-T1
Valid prediction for GeneMark_model.109188_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 55, 149
Sorry, prediction GeneMark_model.109189_t fails validation.
(TCC)	 AG	55-149	GT	GGG
(ACA)	 AG	533-588	GT	AGG
(GGG)	 AG	612-665	GT	AAG
(GGG)	 AG	731-736	GT	GAG
(AGG)	 AG	758-859	GT	GAG
(ACA)	 AG	883-909	GT	AAG
(AGA)	 AG	934-975	GT	CTG
(GAG)	 AG	1298-1306	GT	CAG
(AGA)	 AG	1333-1344	GT	GAG
(GGA)	 AG	1413-1448	GT	GAG
(AAA)	 AG	1482-1500	TA	AAT
-recovered GeneMark_model.109189_t, terminal, 1482, 1500
-recovered GeneMark_model.109189_t, internal, 55, 149
-recovered GeneMark_model.109189_t, internal, 533, 588
-recovered GeneMark_model.109189_t, internal, 612, 665
-recovered GeneMark_model.109189_t, internal, 731, 736
-recovered GeneMark_model.109189_t, internal, 758, 859
-recovered GeneMark_model.109189_t, internal, 883, 909
-recovered GeneMark_model.109189_t, internal, 934, 975
-recovered GeneMark_model.109189_t, internal, 1298, 1306
-recovered GeneMark_model.109189_t, internal, 1333, 1344
-recovered GeneMark_model.109189_t, internal, 1413, 1448
Couldn't classify 55, 149
Couldn't classify 2527, 2584
Sorry, prediction snap_scaffold_1312-snap.1-T1 fails validation.
(TCC)	 AG	55-149	GT	GGG
(TGT)	 AG	490-588	GT	AGG
(TCC)	 AG	2527-2584	GT	AGG
-recovered snap_scaffold_1312-snap.1-T1, internal, 55, 149
-recovered snap_scaffold_1312-snap.1-T1, internal, 490, 588
-recovered snap_scaffold_1312-snap.1-T1, internal, 2527, 2584

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2635, rend_intergenic: 159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2689
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2635, rend_intergenic: 159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support