-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1311

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 665, 1152
Sorry, prediction snap_scaffold_1311-snap.1-T1 fails validation.
(GGG)	 AG	665-1152	GT	CTG
-recovered snap_scaffold_1311-snap.1-T1, internal, 665, 1152
Couldn't classify 510, 523
Couldn't classify 2386, 2429
Sorry, prediction GeneMark_model.109187_t fails validation.
(GTG)	 AG	510-523	GT	GGG
(GAG)	 AG	629-706	GT	TCG
(AGG)	 AG	755-820	GT	GAG
(AGG)	 AG	842-886	GT	GAG
(AGA)	 AG	911-1057	GT	GAG
(AGG)	 AG	1080-1152	GT	CTG
(TTT)	 AG	1184-1238	GT	AGG
(GCA)	 AG	1388-1394	GT	AGG
(AGG)	 AG	1664-1687	GT	GAG
(GGA)	 AG	2386-2429	GT	GGG
-recovered GeneMark_model.109187_t, internal, 510, 523
-recovered GeneMark_model.109187_t, internal, 629, 706
-recovered GeneMark_model.109187_t, internal, 755, 820
-recovered GeneMark_model.109187_t, internal, 842, 886
-recovered GeneMark_model.109187_t, internal, 911, 1057
-recovered GeneMark_model.109187_t, internal, 1080, 1152
-recovered GeneMark_model.109187_t, internal, 1184, 1238
-recovered GeneMark_model.109187_t, internal, 1388, 1394
-recovered GeneMark_model.109187_t, internal, 1664, 1687
-recovered GeneMark_model.109187_t, internal, 2386, 2429

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1972, 2158
Sorry, prediction Augustus_model.g41617.t1 fails validation.
(ATG)	 TA	1279-1334	GT	TGG
(ACT)	 AG	1972-2158	GT	AGG
-recovered Augustus_model.g41617.t1, initial, 1279, 1334
-recovered Augustus_model.g41617.t1, internal, 1972, 2158
Valid prediction for GlimmerHMM_glimmerT_62577-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62577-T1 1972-2191-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2696
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support