-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1310

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1070, 1221
Sorry, prediction GeneMark_model.109186_t fails validation.
(ATG)	 CG	919-962	GT	AGG
(GGG)	 AG	1029-1049	GT	AGG
(GAG)	 AG	1070-1221	GT	TTG
-recovered GeneMark_model.109186_t, initial, 919, 962
-recovered GeneMark_model.109186_t, internal, 1029, 1049
-recovered GeneMark_model.109186_t, internal, 1070, 1221

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62576-T1
Couldn't classify 1718, 1818
Couldn't classify 2432, 2606
Sorry, prediction snap_scaffold_1310-snap.1-T1 fails validation.
(GAC)	 AG	1718-1818	GT	AGG
(GAC)	 AG	2334-2382	GT	AGG
(GCC)	 AG	2432-2606	GT	AGG
-recovered snap_scaffold_1310-snap.1-T1, internal, 1718, 1818
-recovered snap_scaffold_1310-snap.1-T1, internal, 2334, 2382
-recovered snap_scaffold_1310-snap.1-T1, internal, 2432, 2606
Couldn't classify 2559, 2639
Sorry, prediction GeneMark_model.109185_t fails validation.
(ATG)	 GG	1952-1974	GT	GGG
(AGA)	 AG	2217-2225	GT	GGG
(GAG)	 AG	2365-2382	GT	AGG
(AGG)	 AG	2476-2517	GT	GAG
(GAA)	 AG	2559-2639	GT	CAG
-recovered GeneMark_model.109185_t, initial, 1952, 1974
-recovered GeneMark_model.109185_t, internal, 2217, 2225
-recovered GeneMark_model.109185_t, internal, 2365, 2382
-recovered GeneMark_model.109185_t, internal, 2476, 2517
-recovered GeneMark_model.109185_t, internal, 2559, 2639
Valid prediction for Augustus_model.g41616.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2712
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support