-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_131

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61355-T1
Valid prediction for GeneMark_model.106684_t
Valid prediction for Augustus_model.g40812.t1
Valid prediction for snap_scaffold_131-snap.2-T1
Valid prediction for GeneMark_model.106685_t
Couldn't classify 13092, 13382
Sorry, prediction GlimmerHMM_glimmerT_61357-T1 fails validation.
(ATG)	 AC	12456-12606	GT	CTG
(GTA)	 AG	13092-13382	GT	GGG
-recovered GlimmerHMM_glimmerT_61357-T1, initial, 12456, 12606
-recovered GlimmerHMM_glimmerT_61357-T1, internal, 13092, 13382

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61354-T1
Couldn't classify 251, 313
Sorry, prediction snap_scaffold_131-snap.3-T1 fails validation.
(TAT)	 AG	251-313	GT	AGG
(TAT)	 AG	1009-1148	GT	AGG
(AAC)	 AG	1619-1655	CA	GAC
-recovered snap_scaffold_131-snap.3-T1, terminal, 1619, 1655
-recovered snap_scaffold_131-snap.3-T1, internal, 251, 313
-recovered snap_scaffold_131-snap.3-T1, internal, 1009, 1148
Valid prediction for GlimmerHMM_glimmerT_61356-T1
Valid prediction for CodingQuarry_transcript_13333-T1
Couldn't classify 9263, 9363
Sorry, prediction pasa_asmbl_11678.p2 fails validation.
(GGG)	 CA	9263-9363	GT	AGG
(GAT)	 AG	10599-10650	GT	CAG
(GAA)	 AG	10827-10979	AC	AGA
-recovered pasa_asmbl_11678.p2, terminal, 10827, 10979
-recovered pasa_asmbl_11678.p2, internal, 10599, 10650
Valid prediction for HiQ_model.g40811.t1
Couldn't classify 10599, 10650
Sorry, prediction snap_scaffold_131-snap.1-T1 fails validation.
(ATG)	 CA	3668-3769	GT	GGG
(GGT)	 AG	4384-4515	GT	AGG
(CTG)	 AG	5179-5205	GT	GGG
(GTA)	 AG	9106-9115	GT	CAG
(GGT)	 AG	9264-9363	GT	AGG
(GAT)	 AG	10599-10650	GT	CAG
-recovered snap_scaffold_131-snap.1-T1, initial, 3668, 3769
-recovered snap_scaffold_131-snap.1-T1, internal, 4384, 4515
-recovered snap_scaffold_131-snap.1-T1, internal, 5179, 5205
-recovered snap_scaffold_131-snap.1-T1, internal, 9106, 9115
-recovered snap_scaffold_131-snap.1-T1, internal, 9264, 9363
-recovered snap_scaffold_131-snap.1-T1, internal, 10599, 10650
Couldn't classify 251, 313
Sorry, prediction GeneMark_model.106687_t fails validation.
(TAT)	 AG	251-313	GT	AGG
(AGC)	 AG	340-390	GT	AGG
(TAT)	 AG	1009-1071	GT	AGG
(AGC)	 AG	1098-1148	GT	AGG
(TAC)	 AG	1171-1179	GC	GAG
-recovered GeneMark_model.106687_t, terminal, 1171, 1179
-recovered GeneMark_model.106687_t, internal, 251, 313
-recovered GeneMark_model.106687_t, internal, 340, 390
-recovered GeneMark_model.106687_t, internal, 1009, 1071
-recovered GeneMark_model.106687_t, internal, 1098, 1148
-recovered GeneMark_model.106687_t, internal, 1171, 1179
Valid prediction for GeneMark_model.106686_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9906, rend_intergenic: 8503  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 13573
-exon list size: 64


building trellis

1.5    
3.0    
4.5    
6.1    
7.6    
9.1    
10.6    
12.1    
13.6    
15.2    
16.7    
18.2    
19.7    
21.2    
22.7    
24.2    
25.8    
27.3    
28.8    
30.3    
31.8    
33.3    
34.8    
36.4    
37.9    
39.4    
40.9    
42.4    
43.9    
45.5    
47.0    
48.5    
50.0    
51.5    
53.0    
54.5    
56.1    
57.6    
59.1    
60.6    
62.1    
63.6    
65.2    
66.7    
68.2    
69.7    
71.2    
72.7    
74.2    
75.8    
77.3    
78.8    
80.3    
81.8    
83.3    
84.8    
86.4    
87.9    
89.4    
90.9    
92.4    
93.9    
95.5    
97.0    
98.5    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 9906, rend_intergenic: 8503  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support