-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1309

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 48, 53
Sorry, prediction GeneMark_model.109184_t fails validation.
(GGG)	 AG	48-53	GT	ACG
(CAG)	 AG	580-773	GT	AGG
(GAG)	 AG	1534-1823	GG	GAG
-recovered GeneMark_model.109184_t, terminal, 1534, 1823
-recovered GeneMark_model.109184_t, internal, 48, 53
-recovered GeneMark_model.109184_t, internal, 580, 773
Couldn't classify 580, 773
Sorry, prediction Augustus_model.g41615.t1 fails validation.
(CAG)	 AG	580-773	GT	AGG
(GAG)	 AG	1534-1823	GG	GAG
-recovered Augustus_model.g41615.t1, terminal, 1534, 1823
-recovered Augustus_model.g41615.t1, internal, 580, 773
Valid prediction for GlimmerHMM_glimmerT_62575-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62575-T1 1534-1823-terminal-1 is invalid.
Couldn't classify 580, 773
Sorry, prediction snap_scaffold_1309-snap.2-T1 fails validation.
(CAG)	 AG	580-773	GT	AGG
(GAG)	 AG	1534-1823	GG	GAG
-recovered snap_scaffold_1309-snap.2-T1, terminal, 1534, 1823
-recovered snap_scaffold_1309-snap.2-T1, internal, 580, 773

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 920, 1099
Couldn't classify 2126, 2231
Sorry, prediction snap_scaffold_1309-snap.1-T1 fails validation.
(GTC)	 AG	920-1099	GT	AGG
(CTC)	 AG	1968-2057	GT	AGG
(GGT)	 AG	2126-2231	GT	AGG
-recovered snap_scaffold_1309-snap.1-T1, internal, 920, 1099
-recovered snap_scaffold_1309-snap.1-T1, internal, 1968, 2057
-recovered snap_scaffold_1309-snap.1-T1, internal, 2126, 2231

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1793, rend_intergenic: 580  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2712
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1793, rend_intergenic: 580  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support