-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1308

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 335, 398
Sorry, prediction GlimmerHMM_glimmerT_62574-T1 fails validation.
(GCT)	 AG	335-398	GT	GGG
(GAA)	 AG	541-609	GT	AGG
(AGC)	 AG	802-942	GT	AAG
(GTG)	 AG	1767-2103	AA	GAA
-recovered GlimmerHMM_glimmerT_62574-T1, terminal, 1767, 2103
-recovered GlimmerHMM_glimmerT_62574-T1, internal, 335, 398
-recovered GlimmerHMM_glimmerT_62574-T1, internal, 541, 609
-recovered GlimmerHMM_glimmerT_62574-T1, internal, 802, 942
Couldn't classify 541, 609
Couldn't classify 2093, 2119
Sorry, prediction snap_scaffold_1308-snap.1-T1 fails validation.
(GAA)	 AG	541-609	GT	AGG
(AGC)	 AG	802-942	GT	AAG
(GTG)	 AG	1767-1878	GT	TGG
(ATG)	 AG	2093-2119	GT	TGG
-recovered snap_scaffold_1308-snap.1-T1, initial, 2093, 2119
-recovered snap_scaffold_1308-snap.1-T1, internal, 541, 609
-recovered snap_scaffold_1308-snap.1-T1, internal, 802, 942
-recovered snap_scaffold_1308-snap.1-T1, internal, 1767, 1878
-recovered snap_scaffold_1308-snap.1-T1, internal, 2093, 2119
Couldn't classify 335, 398
Couldn't classify 2093, 2119
Sorry, prediction Augustus_model.g41614.t1 fails validation.
(GCT)	 AG	335-398	GT	GGG
(GAA)	 AG	541-609	GT	AGG
(AGC)	 AG	802-942	GT	AAG
(GTG)	 AG	1767-1878	GT	TGG
(ATG)	 AG	2093-2119	GT	TGG
-recovered Augustus_model.g41614.t1, initial, 2093, 2119
-recovered Augustus_model.g41614.t1, internal, 335, 398
-recovered Augustus_model.g41614.t1, internal, 541, 609
-recovered Augustus_model.g41614.t1, internal, 802, 942
-recovered Augustus_model.g41614.t1, internal, 1767, 1878
-recovered Augustus_model.g41614.t1, internal, 2093, 2119
Couldn't classify 1767, 1878
Sorry, prediction GeneMark_model.109183_t fails validation.
(ATG)	 GA	621-682	GT	GGG
(AGC)	 AG	802-942	GT	AAG
(GTG)	 AG	1767-1878	GT	TGG
-recovered GeneMark_model.109183_t, initial, 621, 682
-recovered GeneMark_model.109183_t, internal, 802, 942
-recovered GeneMark_model.109183_t, internal, 1767, 1878

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2713
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support