-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1307

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62573-T1
Valid prediction for snap_scaffold_1307-snap.2-T1
Couldn't classify 28, 507
Sorry, prediction pasa_asmbl_11677.p1 fails validation.
(TTC)	 GA	28-507	AG	AGA
Valid prediction for snap_scaffold_1307-snap.1-T1
Couldn't classify 1, 507
Sorry, prediction Augustus_model.g41613.t1 fails validation.
(CCC)	 GA	1-507	AG	AGA
Couldn't classify 16, 503
Sorry, prediction GeneMark_model.109181_t fails validation.
(TCT)	 AG	16-503	GT	GGG
(GGA)	 AG	526-558	GT	AGG
(ACG)	 AG	597-624	GA	GAG
-recovered GeneMark_model.109181_t, terminal, 597, 624
-recovered GeneMark_model.109181_t, internal, 16, 503
-recovered GeneMark_model.109181_t, internal, 526, 558

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 606, 776
Sorry, prediction GeneMark_model.109182_t fails validation.
(GAG)	 AG	606-776	GT	AAG
(AGA)	 AG	1264-1272	GT	GAG
(AGA)	 AG	1302-1344	GA	GAG
-recovered GeneMark_model.109182_t, terminal, 1302, 1344
-recovered GeneMark_model.109182_t, internal, 606, 776
-recovered GeneMark_model.109182_t, internal, 1264, 1272

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2713
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support