-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1306

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 54, 170
Sorry, prediction GeneMark_model.109179_t fails validation.
(CTA)	 AG	54-170	GT	ACG
(ACT)	 AG	206-212	GT	CTG
(GAA)	 AG	269-439	GT	TGG
(GGA)	 AG	462-470	GT	GTG
(GAG)	 AG	1342-1525	TA	AAT
-recovered GeneMark_model.109179_t, terminal, 1342, 1525
-recovered GeneMark_model.109179_t, internal, 54, 170
-recovered GeneMark_model.109179_t, internal, 206, 212
-recovered GeneMark_model.109179_t, internal, 269, 439
-recovered GeneMark_model.109179_t, internal, 462, 470

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109180_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2715
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support