-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1304

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 97, 154
Sorry, prediction GeneMark_model.109178_t fails validation.
(GTT)	 AG	97-154	GT	AGG
(GGT)	 AG	2155-2163	GT	GAG
(GGT)	 AG	2197-2211	GT	AGG
(GGT)	 AG	2239-2389	AG	AGA
-recovered GeneMark_model.109178_t, terminal, 2239, 2389
-recovered GeneMark_model.109178_t, internal, 97, 154
-recovered GeneMark_model.109178_t, internal, 2155, 2163
-recovered GeneMark_model.109178_t, internal, 2197, 2211

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62572-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2725
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support