-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1301

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62570-T1
Couldn't classify 933, 938
Sorry, prediction GeneMark_model.109170_t fails validation.
(AGA)	 AG	933-938	GT	AGG
(AGG)	 AG	1010-1021	GT	GAG
(AGA)	 AG	1052-1069	GT	AGG
(GGA)	 AG	1092-1181	GT	AGG
(GAG)	 AG	1217-1228	GT	GAG
(TGA)	 AG	1253-1261	GT	AGG
(GAG)	 AG	1287-1319	GT	AGG
(GGA)	 AG	1343-1366	GT	AGG
(GGA)	 AG	1389-1421	GT	AGG
(GTT)	 AG	1448-1474	GT	AGG
(GTG)	 AG	1503-1559	GT	AGG
(GGA)	 AG	1584-1589	GT	GGG
(GGA)	 AG	1611-1643	GT	AGG
(GTG)	 AG	1668-1769	GT	AGG
(GGA)	 AG	1791-1820	GT	AGG
(GAG)	 AG	1859-1870	GT	AGG
(GAA)	 AG	1893-1922	GT	AGG
(GGA)	 AG	1945-1974	GT	AGG
(AGA)	 AG	2007-2021	GT	AAG
(GAA)	 AG	2049-2078	GT	AGG
(GGG)	 AG	2101-2130	GT	AGG
(GAA)	 AG	2153-2182	GT	GGG
(GGA)	 AG	2205-2238	AG	GAA
-recovered GeneMark_model.109170_t, terminal, 1791, 1820
-recovered GeneMark_model.109170_t, terminal, 2101, 2130
-recovered GeneMark_model.109170_t, terminal, 2205, 2238
-recovered GeneMark_model.109170_t, internal, 933, 938
-recovered GeneMark_model.109170_t, internal, 1010, 1021
-recovered GeneMark_model.109170_t, internal, 1052, 1069
-recovered GeneMark_model.109170_t, internal, 1092, 1181
-recovered GeneMark_model.109170_t, internal, 1217, 1228
-recovered GeneMark_model.109170_t, internal, 1253, 1261
-recovered GeneMark_model.109170_t, internal, 1287, 1319
-recovered GeneMark_model.109170_t, internal, 1343, 1366
-recovered GeneMark_model.109170_t, internal, 1389, 1421
-recovered GeneMark_model.109170_t, internal, 1448, 1474
-recovered GeneMark_model.109170_t, internal, 1503, 1559
-recovered GeneMark_model.109170_t, internal, 1584, 1589
-recovered GeneMark_model.109170_t, internal, 1611, 1643
-recovered GeneMark_model.109170_t, internal, 1668, 1769
-recovered GeneMark_model.109170_t, internal, 1791, 1820
-recovered GeneMark_model.109170_t, internal, 1859, 1870
-recovered GeneMark_model.109170_t, internal, 1893, 1922
-recovered GeneMark_model.109170_t, internal, 1945, 1974
-recovered GeneMark_model.109170_t, internal, 2007, 2021
-recovered GeneMark_model.109170_t, internal, 2049, 2078
-recovered GeneMark_model.109170_t, internal, 2101, 2130
-recovered GeneMark_model.109170_t, internal, 2153, 2182

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 15, 33
Sorry, prediction GeneMark_model.109171_t fails validation.
(AGA)	 AG	15-33	GT	GAG
(AGA)	 AG	51-62	GT	AGG
(CGA)	 AG	251-319	GT	GAG
(AGA)	 AG	341-377	CA	AAC
-recovered GeneMark_model.109171_t, terminal, 341, 377
-recovered GeneMark_model.109171_t, internal, 15, 33
-recovered GeneMark_model.109171_t, internal, 51, 62
-recovered GeneMark_model.109171_t, internal, 251, 319

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2728
-exon list size: 62


building trellis

1.6    
3.1    
4.7    
6.2    
7.8    
9.4    
10.9    
12.5    
14.1    
15.6    
17.2    
18.8    
20.3    
21.9    
23.4    
25.0    
26.6    
28.1    
29.7    
31.2    
32.8    
34.4    
35.9    
37.5    
39.1    
40.6    
42.2    
43.8    
45.3    
46.9    
48.4    
50.0    
51.6    
53.1    
54.7    
56.2    
57.8    
59.4    
60.9    
62.5    
64.1    
65.6    
67.2    
68.8    
70.3    
71.9    
73.4    
75.0    
76.6    
78.1    
79.7    
81.2    
82.8    
84.4    
85.9    
87.5    
89.1    
90.6    
92.2    
93.8    
95.3    
96.9    
98.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support